Cagra.2527s0006 (Capsella grandiflora)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Cagra.2527s0006 T344737_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.936 0.575
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.936 0.575
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.936 0.575
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.928 0.547
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.925 0.538
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.914 0.566
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.887 0.443
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.885 0.462
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.885 0.462
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.862 0.443
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.862 0.443
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.839 0.406
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2527s0006.1.p TCP 27 187

Links

Other TCP family TFs
Other Capsella grandiflora TFs

406 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nhr-86 Caenorhabditis elegans WBGene00003676 D
L893_g9517 Steinernema glaseri L893_g9517 I
L596_g27786 Steinernema carpocapsae L596_g27786 I
L596_g9106 Steinernema carpocapsae L596_g9106 I
L889_g10781 Steinernema feltiae L889_g10781 I
L889_g17146 Steinernema feltiae L889_g17146 I
L889_g9698 Steinernema feltiae L889_g9698 I
L889_g987 Steinernema feltiae L889_g987 I
L892_g8140 Steinernema scapterisci L892_g8140 I
L892_g8144 Steinernema scapterisci L892_g8144 I
L892_g8145 Steinernema scapterisci L892_g8145 I
L893_g2090 Steinernema glaseri L893_g2090 I
L893_g4569 Steinernema glaseri L893_g4569 I
CBG12152 Caenorhabditis briggsae CBG12152 I
L898_g10723 Steinernema monticolum L898_g10723 I
L898_g18539 Steinernema monticolum L898_g18539 I
L898_g28806 Steinernema monticolum L898_g28806 I
L898_g9580 Steinernema monticolum L898_g9580 I
NECAME_01500 Necator americanus NECAME_01500 I
scaffold1235-EXSNAP2012.2 Pristionchus exspectatus scaffold1235-EXSNAP2012.2 I
scaffold183-EXSNAP2012.18 Pristionchus exspectatus scaffold183-EXSNAP2012.18 I
scaffold260-EXSNAP2012.15 Pristionchus exspectatus scaffold260-EXSNAP2012.15 I
SMUV_0000801801 Syphacia muris SMUV_0000801801 I
SMUV_0000886001 Syphacia muris SMUV_0000886001 I
SMUV_0000909301 Syphacia muris SMUV_0000909301 I
CBN03769 Caenorhabditis brenneri CBN03769 I
CBN24070 Caenorhabditis brenneri CBN24070 I
CJA04414 Caenorhabditis japonica CJA04414 I
CJA07390 Caenorhabditis japonica CJA07390 I
CJA10576 Caenorhabditis japonica CJA10576 I
CRE17354 Caenorhabditis remanei CRE17354 I
CRE18529 Caenorhabditis remanei CRE18529 I
CRE27659 Caenorhabditis remanei CRE27659 I
PPA08785 Pristionchus pacificus PPA08785 I
PPA10478 Pristionchus pacificus PPA10478 I
CBN04619 Caenorhabditis brenneri CBN04619 I
PPA29361 Pristionchus pacificus PPA29361 I
nhr-28 Caenorhabditis elegans WBGene00003624 I
nhr-109 Caenorhabditis elegans WBGene00003699 I
nhr-273 Caenorhabditis elegans WBGene00020460 I
CBG16375 Caenorhabditis briggsae CBG16375 I
BXY_0973100 Bursaphelenchus xylophilus BXY_0973100 I
EVEC_0001095701 Enterobius vermicularis EVEC_0001095701 I
CBG03687 Caenorhabditis briggsae CBG03687 I
EVEC_0001266201 Enterobius vermicularis EVEC_0001266201 I
TCNE_0001892601 Toxocara canis TCNE_0001892601 N
SSTP_0000309200 Strongyloides stercoralis SSTP_0000309200 N
L596_g24910 Steinernema carpocapsae L596_g24910 N
L893_g3450 Steinernema glaseri L893_g3450 N
L892_g8146 Steinernema scapterisci L892_g8146 N
ASU_03038 Ascaris suum ASU_03038 N
L889_g16048 Steinernema feltiae L889_g16048 N
GPLIN_000628500 Globodera pallida GPLIN_000628500 N
GPLIN_000805100 Globodera pallida GPLIN_000805100 N