ONIVA11G04340 (Oryza nivara)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 ONIVA11G04340 T003672_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.794 0.880
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.794 0.880
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.794 0.880
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.794 0.880
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.785 0.820
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.785 0.820
ERF113
M01629_2.00 		Arabidopsis thaliana
NNGCCGHHNN
NNDDCGGCNN		 PBM
Weirauch et al.(2014)
pTH8097 		0.723 0.800
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.718 0.820
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.718 0.820
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.718 0.820
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.718 0.780
ABR1
M01051_2.00 		Arabidopsis thaliana
NYGSCGSCVNN
NNBGSCGSCRN		 PBM
Sullivan et al.(2014)
pTH7383 		0.716 0.820
ABR1
M06684_2.00 		Arabidopsis thaliana
CKCCGCCGYMDHHNYHNHH
DDNDRNDDHKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ABR1_col_a 		0.716 0.820
ABR1
M06685_2.00 		Arabidopsis thaliana
HNNHDSCGCCGCMAWHNNNNN
NNNNNDWTKGCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ABR1_colamp_a 		0.716 0.820
A4F248_TOBAC
M09725_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF1_01 		0.707 0.840
A4F249_TOBAC
M09726_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WRAF2_01 		0.702 0.820
ERF5
M00721_2.00 		Arabidopsis thaliana
NNNGSMRNMN
NKNYKSCNNN		 PBM
Chang et al.(2013)
pTH7197 		0.682 0.780
ERF5
M06674_2.00 		Arabidopsis thaliana
YCDYCKCCGCCGYCD
HGRCGGCGGMGRHGR		 Dap-seq
OMalley et al.(2016)
ERF5_col_a 		0.682 0.780
ERF5
M06675_2.00 		Arabidopsis thaliana
NHDBCGCCGCCRYHDNHDNNN
NNNHDNHDRYGGCGGCGVHDN		 Dap-seq
OMalley et al.(2016)
ERF5_colamp_a 		0.682 0.780
RAP2-2
M00719_2.00 		Arabidopsis thaliana
NNRBYGNN
NNCRVYNN		 PBM
Chang et al.(2013)
pTH7227 		0.681 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA11G04340.1 AP2 129 180

Links

Other AP2 family TFs
Other Oryza nivara TFs

607 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29983.m003131 Ricinus communis 29983.m003131 I
30054.m000786 Ricinus communis 30054.m000786 I
AMTR_s00058p00133630 Amborella trichopoda AMTR_s00058p00133630 I
APRR2 Arabidopsis thaliana AT4G18020 D
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I
Aquca_051_00026 Aquilegia coerulea Aquca_051_00026 I
ARR1 Arabidopsis thaliana AT3G16857 D
ARR2 Arabidopsis lyrata scaffold_702902.1 I
BGIOSGA002040 Oryza indica BGIOSGA002040 I
BGIOSGA022875 Oryza indica BGIOSGA022875 I
Bo1g055180 Brassica oleracea Bo1g055180 I
Bo3g068550 Brassica oleracea Bo3g068550 I
Bo5g123620 Brassica oleracea Bo5g123620 I
Bo7g003410 Brassica oleracea Bo7g003410 I
Bo7g067200 Brassica oleracea Bo7g067200 I
Bo8g102300 Brassica oleracea Bo8g102300 I
Bostr.0556s0001 Boechera stricta Bostr.0556s0001 I
Bostr.28625s0008 Boechera stricta Bostr.28625s0008 I
Bostr.30275s0051 Boechera stricta Bostr.30275s0051 I
Bostr.3148s0040 Boechera stricta Bostr.3148s0040 I
Bostr.7903s0106 Boechera stricta Bostr.7903s0106 I
Bra001643 Brassica rapa Bra001643 I
Bra022183 Brassica rapa Bra022183 I
Bra031129 Brassica rapa Bra031129 I
Bra033527 Brassica rapa Bra033527 I
Bra033726 Brassica rapa Bra033726 I
Bra036015 Brassica rapa Bra036015 I
BRADI1G43710 Brachypodium distachyon BRADI1G43710 I
BRADI2G08287 Brachypodium distachyon BRADI2G08287 I
Cagra.0053s0018 Capsella grandiflora Cagra.0053s0018 I
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I
Cagra.2516s0014 Capsella grandiflora Cagra.2516s0014 I
Cagra.5497s0018 Capsella grandiflora Cagra.5497s0018 I
Carubv10007581m.g Capsella rubella Carubv10007581m.g I
Carubv10013107m.g Capsella rubella Carubv10013107m.g I
Carubv10014114m.g Capsella rubella Carubv10014114m.g I
Carubv10026528m.g Capsella rubella Carubv10026528m.g I
cassava43649.valid.m1 Manihot esculenta cassava43649.valid.m1 I
cassava43650.valid.m1 Manihot esculenta cassava43650.valid.m1 I
cassava9823.m1 Manihot esculenta cassava9823.m1 I
Ca_02452 Cicer arietinum Ca_02452 I
Ca_11268 Cicer arietinum Ca_11268 I
chr3.CM0160.680.nd Lotus japonicus chr3.CM0160.680.nd I
Ciclev10015266m.g Citrus clementina Ciclev10015266m.g I
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I
Cla003791 Citrullus lanatus Cla003791 I
Cucsa.087530 Cucumis sativus Cucsa.087530 I
estExt_Genewise1.C_90203 Chlorella NC64A estExt_Genewise1.C_90203 I
estExt_gwp_gw1.C_310256 Physcomitrella patens estExt_gwp_gw1.C_310256 I
Eucgr.A01857 Eucalyptus grandis Eucgr.A01857 I
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I
Eucgr.K01056 Eucalyptus grandis Eucgr.K01056 I
F775_20285 Aegilops tauschii F775_20285 I
fgenesh1_pm.scaffold_311000005 Physcomitrella patens fgenesh1_pm.scaffold_311000005 I
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I
gene17750-v1.0-hybrid Fragaria vesca gene17750-v1.0-hybrid I
GLK1 Oryza sativa OS06G0348800 I
GLK2 Arabidopsis thaliana AT5G44190 I
GLK2 Oryza sativa OS01G0239000 I
GLYMA06G44330 Glycine max GLYMA06G44330 I
GLYMA12G13430 Glycine max GLYMA12G13430 I
GLYMA12G33430 Glycine max GLYMA12G33430 I
GLYMA13G37010 Glycine max GLYMA13G37010 I
Gorai.002G020300 Gossypium raimondii Gorai.002G020300 I
Gorai.008G155000 Gossypium raimondii Gorai.008G155000 I
Gorai.012G126600 Gossypium raimondii Gorai.012G126600 I
GPRI1 Arabidopsis thaliana AT2G20570 D
GPRI1 Arabidopsis lyrata fgenesh2_kg.3__3588__AT2G20570.1 I
GPRI1 Vitis vinifera VIT_12s0028g03100 I
GRMZM2G026833 Zea mays GRMZM2G026833 I
GRMZM2G087804 Zea mays GRMZM2G087804 I
GSMUA_Achr10G26160_001 Musa acuminata GSMUA_Achr10G26160_001 I
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I
GSMUA_Achr6G05850_001 Musa acuminata GSMUA_Achr6G05850_001 I
GSMUA_Achr7G11040_001 Musa acuminata GSMUA_Achr7G11040_001 I
GSMUA_Achr9G16610_001 Musa acuminata GSMUA_Achr9G16610_001 I
LPERR01G08320 Leersia perrieri LPERR01G08320 I
LPERR06G12880 Leersia perrieri LPERR06G12880 I
Lus10016846.g Linum usitatissimum Lus10016846.g I
Lus10018649.g Linum usitatissimum Lus10018649.g I
Lus10033642.g Linum usitatissimum Lus10033642.g I
Lus10037719.g Linum usitatissimum Lus10037719.g I
Lus10039883.g Linum usitatissimum Lus10039883.g I
Lus10040109.g Linum usitatissimum Lus10040109.g I
MDP0000225179 Malus domestica MDP0000225179 I
MDP0000237396 Malus domestica MDP0000237396 I
MDP0000526864 Malus domestica MDP0000526864 I
mgf004257m Mimulus guttatus mgf004257m I
mgf007181m Mimulus guttatus mgf007181m I
mgf014879m Mimulus guttatus mgf014879m I
MLOC_43537 Hordeum vulgare MLOC_43537 I
MLOC_65876 Hordeum vulgare MLOC_65876 I
MTR_2g090675 Medicago truncatula MTR_2g090675 I
MTR_4g078810 Medicago truncatula MTR_4g078810 I
OB01G18980 Oryza brachyantha OB01G18980 I
OB06G22250 Oryza brachyantha OB06G22250 I
OBART03G02540 Oryza barthii OBART03G02540 I
OGLUM01G10130 Oryza glumaepatula OGLUM01G10130 I
OGLUM06G15080 Oryza glumaepatula OGLUM06G15080 I
OMERI01G08840 Oryza meridionalis OMERI01G08840 I
OMERI06G15340 Oryza meridionalis OMERI06G15340 I
ONIVA01G11450 Oryza nivara ONIVA01G11450 I
ONIVA06G16920 Oryza nivara ONIVA06G16920 I
OPUNC01G08680 Oryza punctata OPUNC01G08680 I
OPUNC06G13180 Oryza punctata OPUNC06G13180 I
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I
orange1.1g013528m.g Citrus sinensis orange1.1g013528m.g I
ORGLA01G0079000 Oryza glaberrima ORGLA01G0079000 I
ORGLA06G0126200 Oryza glaberrima ORGLA06G0126200 I
ORUFI01G09620 Oryza rufipogon ORUFI01G09620 I
ORUFI06G15000 Oryza rufipogon ORUFI06G15000 I
Pavir.Db01285 Panicum virgatum Pavir.Db01285 I
Pavir.Ea00014 Panicum virgatum Pavir.Ea00014 I
Pavir.Eb00063 Panicum virgatum Pavir.Eb00063 I
Pavir.J11422 Panicum virgatum Pavir.J11422 I
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I
PDK_20s1662851g001 Phoenix dactylifera PDK_20s1662851g001 I
PDK_20s1887621g001 Phoenix dactylifera PDK_20s1887621g001 I
PGSC0003DMG400009378 Solanum tuberosum PGSC0003DMG400009378 I
PGSC0003DMG400021857 Solanum tuberosum PGSC0003DMG400021857 I
PK19826.1 Cannabis sativa PK19826.1 I
PK27491.1 Cannabis sativa PK27491.1 I
Pm014123 Prunus mume Pm014123 I
Pm014733 Prunus mume Pm014733 I
POPTR_0007s01230 Populus trichocarpa POPTR_0007s01230 I
POPTR_0017s04720 Populus trichocarpa POPTR_0017s04720 I
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I
PRUPE_ppa014599mg Prunus persica PRUPE_ppa014599mg I
SapurV1A.0118s0260 Salix purpurea SapurV1A.0118s0260 I
SapurV1A.0693s0070 Salix purpurea SapurV1A.0693s0070 I
SapurV1A.1950s0030 Salix purpurea SapurV1A.1950s0030 I
Sb03g000400 Sorghum bicolor Sb03g000400 I
Sb10g008400 Sorghum bicolor Sb10g008400 I
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I
Si001336m.g Setaria italica Si001336m.g I
Si006400m.g Setaria italica Si006400m.g I
Solyc07g053630.2 Solanum lycopersicum Solyc07g053630.2 I
TCM_008193 Theobroma cacao TCM_008193 I
TCM_015780 Theobroma cacao TCM_015780 I
Thhalv10001986m.g Eutrema salsugineum Thhalv10001986m.g I
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I
Thhalv10024686m.g Eutrema salsugineum Thhalv10024686m.g I
TRAES3BF062500050CFD_g Triticum aestivum TRAES3BF062500050CFD_g I
Traes_7DL_58DDB90E3 Triticum aestivum Traes_7DL_58DDB90E3 I
TRIUR3_15856 Triticum urartu TRIUR3_15856 I