Tal_R007047 (Tyto alba)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Tal_R007047 T015941_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.785 1.000
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.785 1.000
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.785 1.000
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.785 1.000
Arid5a
M00116_2.00 		Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770 		0.632 0.744
Arid5a
M01663_2.00 		Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121 		0.632 0.744
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.605 0.605
e_gw.4.260.1_CONSTRUCT
M01668_2.00 		PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122 		0.482 0.593
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Tal_R007047 ARID/BRIGHT 230 316

Links

Other ARID/BRIGHT family TFs
Other Tyto alba TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28206.m000104 Ricinus communis 28206.m000104 I
29908.m006005 Ricinus communis 29908.m006005 I
AMTR_s00009p00268560 Amborella trichopoda AMTR_s00009p00268560 I
AMTR_s00010p00194910 Amborella trichopoda AMTR_s00010p00194910 I
AMTR_s00089p00102760 Amborella trichopoda AMTR_s00089p00102760 I
Aquca_014_00591 Aquilegia coerulea Aquca_014_00591 I
Aquca_014_00592 Aquilegia coerulea Aquca_014_00592 I
Aquca_034_00155 Aquilegia coerulea Aquca_034_00155 I
AT5G65130 Arabidopsis thaliana AT5G65130 D
Bo1g002840 Brassica oleracea Bo1g002840 I
Bo3g100470 Brassica oleracea Bo3g100470 I
Bo3g152610 Brassica oleracea Bo3g152610 I
Bo5g037400 Brassica oleracea Bo5g037400 I
Bo5g069450 Brassica oleracea Bo5g069450 I
Bo6g081850 Brassica oleracea Bo6g081850 I
Bo6g121730 Brassica oleracea Bo6g121730 I
Bo7g111910 Brassica oleracea Bo7g111910 I
Bo7g119000 Brassica oleracea Bo7g119000 I
Bo8g054130 Brassica oleracea Bo8g054130 I
Bostr.0568s0279 Boechera stricta Bostr.0568s0279 I
Bostr.12659s0070 Boechera stricta Bostr.12659s0070 I
Bostr.20129s0241 Boechera stricta Bostr.20129s0241 I
Bostr.20910s0012 Boechera stricta Bostr.20910s0012 I
Bostr.25542s0167 Boechera stricta Bostr.25542s0167 I
Bostr.7867s0648 Boechera stricta Bostr.7867s0648 I
Bra008343 Brassica rapa Bra008343 I
Bra010383 Brassica rapa Bra010383 I
Bra015634 Brassica rapa Bra015634 I
Bra017879 Brassica rapa Bra017879 I
Bra024222 Brassica rapa Bra024222 I
Bra026280 Brassica rapa Bra026280 I
Bra031371 Brassica rapa Bra031371 I
Bra040381 Brassica rapa Bra040381 I
Cagra.0096s0029 Capsella grandiflora Cagra.0096s0029 I
Cagra.0917s0073 Capsella grandiflora Cagra.0917s0073 I
Cagra.1225s0083 Capsella grandiflora Cagra.1225s0083 I
Carubv10005203m.g Capsella rubella Carubv10005203m.g I
Carubv10012538m.g Capsella rubella Carubv10012538m.g I
Carubv10020567m.g Capsella rubella Carubv10020567m.g I
Carubv10026925m.g Capsella rubella Carubv10026925m.g I
cassava10153.m1 Manihot esculenta cassava10153.m1 I
cassava23925.valid.m1 Manihot esculenta cassava23925.valid.m1 I
cassava31195.valid.m1 Manihot esculenta cassava31195.valid.m1 I
cassava36179.valid.m1 Manihot esculenta cassava36179.valid.m1 I
Ca_09578 Cicer arietinum Ca_09578 I
Ca_23799 Cicer arietinum Ca_23799 I
chr2.CM0608.10.nd Lotus japonicus chr2.CM0608.10.nd I
chr5.CM0909.290.nc Lotus japonicus chr5.CM0909.290.nc I
Ciclev10001563m.g Citrus clementina Ciclev10001563m.g I
Ciclev10025961m.g Citrus clementina Ciclev10025961m.g I
Cla014376 Citrullus lanatus Cla014376 I
Cla022420 Citrullus lanatus Cla022420 I
Cucsa.104510 Cucumis sativus Cucsa.104510 I
Cucsa.154520 Cucumis sativus Cucsa.154520 I
ERF054 Arabidopsis thaliana AT4G28140 D
ERF055 Arabidopsis thaliana AT1G36060 D
ERF060 Arabidopsis thaliana AT4G39780 I
Eucgr.F00497 Eucalyptus grandis Eucgr.F00497 I
Eucgr.F02440 Eucalyptus grandis Eucgr.F02440 I
Eucgr.I00422 Eucalyptus grandis Eucgr.I00422 I
Eucgr.L03532 Eucalyptus grandis Eucgr.L03532 I
evm.TU.supercontig_36.112 Carica papaya evm.TU.supercontig_36.112 I
evm.TU.supercontig_996.1 Carica papaya evm.TU.supercontig_996.1 I
e_gw1.187.17.1 Physcomitrella patens e_gw1.187.17.1 I
e_gw1.335.26.1 Physcomitrella patens e_gw1.335.26.1 I
fgenesh2_kg.1__2408__AT1G22190.1 Arabidopsis lyrata fgenesh2_kg.1__2408__AT1G22190.1 I
fgenesh2_kg.1__3660__AT1G36060.1 Arabidopsis lyrata fgenesh2_kg.1__3660__AT1G36060.1 I
fgenesh2_kg.7__1395__AT4G28140.1 Arabidopsis lyrata fgenesh2_kg.7__1395__AT4G28140.1 I
fgenesh2_kg.7__195__AT4G39780.1 Arabidopsis lyrata fgenesh2_kg.7__195__AT4G39780.1 I
gene16350-v1.0-hybrid Fragaria vesca gene16350-v1.0-hybrid I
gene22114-v1.0-hybrid Fragaria vesca gene22114-v1.0-hybrid I
GLYMA04G11290 Glycine max GLYMA04G11290 I
GLYMA06G11010 Glycine max GLYMA06G11010 I
GLYMA13G01930 Glycine max GLYMA13G01930 I
GLYMA14G34590 Glycine max GLYMA14G34590 I
Gorai.003G038200 Gossypium raimondii Gorai.003G038200 I
Gorai.006G207800 Gossypium raimondii Gorai.006G207800 I
Gorai.008G153600 Gossypium raimondii Gorai.008G153600 I
Gorai.008G253900 Gossypium raimondii Gorai.008G253900 I
Gorai.009G238800 Gossypium raimondii Gorai.009G238800 I
Gorai.010G043200 Gossypium raimondii Gorai.010G043200 I
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I
GSMUA_Achr10G19030_001 Musa acuminata GSMUA_Achr10G19030_001 I
GSMUA_Achr10G30440_001 Musa acuminata GSMUA_Achr10G30440_001 I
GSMUA_Achr1G27990_001 Musa acuminata GSMUA_Achr1G27990_001 N
GSMUA_Achr9G12950_001 Musa acuminata GSMUA_Achr9G12950_001 I
GSMUA_AchrUn_randomG20840_001 Musa acuminata GSMUA_AchrUn_randomG20840_001 I
LjSGA_026196.1 Lotus japonicus LjSGA_026196.1 I
Lus10000582.g Linum usitatissimum Lus10000582.g I
Lus10016669.g Linum usitatissimum Lus10016669.g I
Lus10016801.g Linum usitatissimum Lus10016801.g I
Lus10019665.g Linum usitatissimum Lus10019665.g I
Lus10020913.g Linum usitatissimum Lus10020913.g I
Lus10033463.g Linum usitatissimum Lus10033463.g I
MDP0000313476 Malus domestica MDP0000313476 I
mgf002388m Mimulus guttatus mgf002388m I
mgf016403m Mimulus guttatus mgf016403m I
mgf023311m Mimulus guttatus mgf023311m I
MTR_3g074130 Medicago truncatula MTR_3g074130 I
MTR_5g062700 Medicago truncatula MTR_5g062700 I
MTR_8g090350 Medicago truncatula MTR_8g090350 I
orange1.1g017798m.g Citrus sinensis orange1.1g017798m.g I
orange1.1g018103m.g Citrus sinensis orange1.1g018103m.g I
Pavir.J13316 Panicum virgatum Pavir.J13316 I
PGSC0003DMG400008538 Solanum tuberosum PGSC0003DMG400008538 I
PGSC0003DMG400020625 Solanum tuberosum PGSC0003DMG400020625 I
PK18885.1 Cannabis sativa PK18885.1 I
PK27482.1 Cannabis sativa PK27482.1 I
Pm002052 Prunus mume Pm002052 I
Pm004824 Prunus mume Pm004824 I
POPTR_0002s09480 Populus trichocarpa POPTR_0002s09480 I
POPTR_0005s07900 Populus trichocarpa POPTR_0005s07900 I
POPTR_0005s16690 Populus trichocarpa POPTR_0005s16690 I
POPTR_0007s05690 Populus trichocarpa POPTR_0007s05690 I
PRUPE_ppa007193mg Prunus persica PRUPE_ppa007193mg I
PRUPE_ppa008234mg Prunus persica PRUPE_ppa008234mg I
PRUPE_ppa020676mg Prunus persica PRUPE_ppa020676mg I
RAP2-13 Arabidopsis thaliana AT1G22190 I
RAP2-4 Arabidopsis thaliana AT1G78080 D
RAP2.4 Arabidopsis lyrata fgenesh2_kg.2__2105__AT1G78080.1 I
SapurV1A.0010s0170 Salix purpurea SapurV1A.0010s0170 I
SapurV1A.0075s0120 Salix purpurea SapurV1A.0075s0120 I
SapurV1A.0335s0040 Salix purpurea SapurV1A.0335s0040 I
SapurV1A.0684s0120 Salix purpurea SapurV1A.0684s0120 I
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I
SELMODRAFT_104980 Selaginella moellendorffii SELMODRAFT_104980 I
SELMODRAFT_73149 Selaginella moellendorffii SELMODRAFT_73149 I
Solyc04g054910.2 Solanum lycopersicum Solyc04g054910.2 I
Solyc12g056980.1 Solanum lycopersicum Solyc12g056980.1 I
TCM_001147 Theobroma cacao TCM_001147 I
TCM_034939 Theobroma cacao TCM_034939 I
Thhalv10008326m.g Eutrema salsugineum Thhalv10008326m.g I
Thhalv10018771m.g Eutrema salsugineum Thhalv10018771m.g I
Thhalv10025862m.g Eutrema salsugineum Thhalv10025862m.g I
Thhalv10025958m.g Eutrema salsugineum Thhalv10025958m.g I
VIT_18s0001g05250 Vitis vinifera VIT_18s0001g05250 I
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I