Carubv10015484m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10015484m.g T049394_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015484m bHLH 244 287

Links

Other bHLH family TFs
Other Capsella rubella TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28152.m000914 Ricinus communis 28152.m000914 N 0.914
30170.m013749 Ricinus communis 30170.m013749 N 0.914
Al_scaffold_0797_1 Arabidopsis lyrata Al_scaffold_0797_1 N 0.873
AMTR_s00164p00062120 Amborella trichopoda AMTR_s00164p00062120 N 0.914
Aquca_017_00066 Aquilegia coerulea Aquca_017_00066 N 0.914
Aquca_042_00162 Aquilegia coerulea Aquca_042_00162 N 0.914
Aquca_042_00163 Aquilegia coerulea Aquca_042_00163 N 0.914
AT2G14760 Arabidopsis thaliana AT2G14760 N 0.914
BGIOSGA010239 Oryza indica BGIOSGA010239 N 0.903
BGIOSGA011251 Oryza indica BGIOSGA011251 N 0.912
BGIOSGA023988 Oryza indica BGIOSGA023988 N 0.914
BGIOSGA035917 Oryza indica BGIOSGA035917 N 0.914
BHLH139 Arabidopsis thaliana AT5G43175 N 0.873
BHLH54 Arabidopsis thaliana AT1G27740 N 0.879
BHLH85 Arabidopsis thaliana AT4G33880 N 0.914
Bo1g007780 Brassica oleracea Bo1g007780 N 0.914
Bo3g142890 Brassica oleracea Bo3g142890 N 0.879
Bo3g169400 Brassica oleracea Bo3g169400 N 0.914
Bo5g052310 Brassica oleracea Bo5g052310 N 0.879
Bo7g048630 Brassica oleracea Bo7g048630 N 0.879
Bo7g116460 Brassica oleracea Bo7g116460 N 0.914
Bostr.15697s0100 Boechera stricta Bostr.15697s0100 N 0.879
Bostr.2199s0029 Boechera stricta Bostr.2199s0029 N 0.914
Bostr.3148s0158 Boechera stricta Bostr.3148s0158 N 0.873
Bostr.7867s1234 Boechera stricta Bostr.7867s1234 N 0.914
Bra010921 Brassica rapa Bra010921 N 0.879
Bra011476 Brassica rapa Bra011476 N 0.914
Bra030063 Brassica rapa Bra030063 N 0.879
Bra032846 Brassica rapa Bra032846 N 0.879
Bra034587 Brassica rapa Bra034587 N 0.914
Bra036969 Brassica rapa Bra036969 N 0.914
BRADI1G14600 Brachypodium distachyon BRADI1G14600 N 0.914
BRADI1G22960 Brachypodium distachyon BRADI1G22960 N 0.882
BRADI1G70860 Brachypodium distachyon BRADI1G70860 N 0.847
BRADI4G03070 Brachypodium distachyon BRADI4G03070 N 0.914
Cagra.1103s0007 Capsella grandiflora Cagra.1103s0007 N 0.873
Cagra.1305s0010 Capsella grandiflora Cagra.1305s0010 N 0.914
Cagra.1822s0081 Capsella grandiflora Cagra.1822s0081 N 0.879
Cagra.9228s0001 Capsella grandiflora Cagra.9228s0001 N 0.914
Carubv10006623m.g Capsella rubella Carubv10006623m.g N 0.914
Carubv10011072m.g Capsella rubella Carubv10011072m.g N 0.879
Carubv10028625m.g Capsella rubella Carubv10028625m.g N 0.873
cassava14986.m1 Manihot esculenta cassava14986.m1 N 0.914
cassava20440.m1 Manihot esculenta cassava20440.m1 N 0.914
cassava25589.m1 Manihot esculenta cassava25589.m1 N 0.914
cassava38950.m1 Manihot esculenta cassava38950.m1 N 0.914
Ca_01588 Cicer arietinum Ca_01588 N 0.914
Ca_05644 Cicer arietinum Ca_05644 N 0.914
Ca_11909 Cicer arietinum Ca_11909 N 0.914
Ca_18366 Cicer arietinum Ca_18366 N 0.914
chr1.CM0088.610.nd Lotus japonicus chr1.CM0088.610.nd N 0.914
chr5.CM0096.500.nd Lotus japonicus chr5.CM0096.500.nd N 0.879
chr5.CM0200.480.nc Lotus japonicus chr5.CM0200.480.nc N 0.879
Ciclev10003450m.g Citrus clementina Ciclev10003450m.g N 0.914
Ciclev10030309m.g Citrus clementina Ciclev10030309m.g N 0.914
Cla016346 Citrullus lanatus Cla016346 N 0.914
Cla020918 Citrullus lanatus Cla020918 N 0.914
Cla022968 Citrullus lanatus Cla022968 N 0.914
Cucsa.097490 Cucumis sativus Cucsa.097490 N 0.914
Cucsa.219180 Cucumis sativus Cucsa.219180 N 0.914
Cucsa.352750 Cucumis sativus Cucsa.352750 N 0.914
Eucgr.F02259 Eucalyptus grandis Eucgr.F02259 N 0.912
Eucgr.G01234 Eucalyptus grandis Eucgr.G01234 N 0.912
Eucgr.I01069 Eucalyptus grandis Eucgr.I01069 N 0.914
evm.TU.supercontig_106.57 Carica papaya evm.TU.supercontig_106.57 N 0.914
evm.TU.supercontig_142.14 Carica papaya evm.TU.supercontig_142.14 N 0.914
F775_02582 Aegilops tauschii F775_02582 N 0.914
F775_02706 Aegilops tauschii F775_02706 N 0.882
F775_27628 Aegilops tauschii F775_27628 N 0.879
fgenesh2_kg.3__3067__AT2G14760.1 Arabidopsis lyrata fgenesh2_kg.3__3067__AT2G14760.1 N 0.902
fgenesh2_kg.8__503__AT5G43175.1 Arabidopsis lyrata fgenesh2_kg.8__503__AT5G43175.1 N 0.873
gene02560-v1.0-hybrid Fragaria vesca gene02560-v1.0-hybrid N 0.914
gene25555-v1.0-hybrid Fragaria vesca gene25555-v1.0-hybrid N 0.879
GLYMA04G04801 Glycine max GLYMA04G04801 N 0.894
GLYMA10G40350 Glycine max GLYMA10G40350 N 0.914
GLYMA10G40360 Glycine max GLYMA10G40360 N 0.914
GLYMA14G09781 Glycine max GLYMA14G09781 N 0.914
GLYMA17G35423 Glycine max GLYMA17G35423 N 0.914
GLYMA20G26980 Glycine max GLYMA20G26980 N 0.914
GLYMA20G26991 Glycine max GLYMA20G26991 N 0.914
Gorai.005G231900 Gossypium raimondii Gorai.005G231900 N 0.914
Gorai.009G219100 Gossypium raimondii Gorai.009G219100 N 0.914
Gorai.010G025400 Gossypium raimondii Gorai.010G025400 N 0.914
GRMZM2G057260 Zea mays GRMZM2G057260 N 0.903
GRMZM2G383841 Zea mays GRMZM2G383841 N 0.903
GRMZM2G395549 Zea mays GRMZM2G395549 N 0.914
GSMUA_Achr2G17130_001 Musa acuminata GSMUA_Achr2G17130_001 N 0.911
GSMUA_Achr3G18870_001 Musa acuminata GSMUA_Achr3G18870_001 N 0.914
GSMUA_Achr4G23240_001 Musa acuminata GSMUA_Achr4G23240_001 N 0.914
GSMUA_Achr6G07760_001 Musa acuminata GSMUA_Achr6G07760_001 N 0.914
GSMUA_Achr6G16890_001 Musa acuminata GSMUA_Achr6G16890_001 N 0.888
GSMUA_Achr9G09600_001 Musa acuminata GSMUA_Achr9G09600_001 N 0.894
GSMUA_AchrUn_randomG07080_001 Musa acuminata GSMUA_AchrUn_randomG07080_001 N 0.890
LPERR03G21650 Leersia perrieri LPERR03G21650 N 0.903
LPERR07G17840 Leersia perrieri LPERR07G17840 N 0.914
LPERR11G16970 Leersia perrieri LPERR11G16970 N 0.912
LPERR12G11190 Leersia perrieri LPERR12G11190 N 0.852
LPERR12G14550 Leersia perrieri LPERR12G14550 N 0.914
Lus10001068.g Linum usitatissimum Lus10001068.g N 0.914
Lus10004315.g Linum usitatissimum Lus10004315.g N 0.914
MDP0000131874 Malus domestica MDP0000131874 N 0.856
MDP0000145825 Malus domestica MDP0000145825 N 0.914
MDP0000198037 Malus domestica MDP0000198037 N 0.914
MDP0000573178 Malus domestica MDP0000573178 N 0.914
MDP0000946515 Malus domestica MDP0000946515 N 0.878
mgf018282m Mimulus guttatus mgf018282m N 0.914
mgf019332m Mimulus guttatus mgf019332m N 0.879
mgf022238m Mimulus guttatus mgf022238m N 0.914
mgf024863m Mimulus guttatus mgf024863m N 0.914
MLOC_60270 Hordeum vulgare MLOC_60270 N 0.914
MLOC_67369 Hordeum vulgare MLOC_67369 N 0.845
MLOC_74022 Hordeum vulgare MLOC_74022 N 0.882
MLOC_76486 Hordeum vulgare MLOC_76486 N 0.914
MTR_1g018090 Medicago truncatula MTR_1g018090 N 0.914
MTR_1g106460 Medicago truncatula MTR_1g106460 N 0.914
MTR_1g106480 Medicago truncatula MTR_1g106480 N 0.914
MTR_3g103030 Medicago truncatula MTR_3g103030 N 0.846
MTR_5g005110 Medicago truncatula MTR_5g005110 N 0.914
OB03G17860 Oryza brachyantha OB03G17860 N 0.912
OB03G34210 Oryza brachyantha OB03G34210 N 0.903
OB07G26210 Oryza brachyantha OB07G26210 N 0.914
OB12G24200 Oryza brachyantha OB12G24200 N 0.914
OBART03G07520 Oryza barthii OBART03G07520 N 0.912
OBART03G26170 Oryza barthii OBART03G26170 N 0.903
OBART12G17400 Oryza barthii OBART12G17400 N 0.914
OGLUM03G07680 Oryza glumaepatula OGLUM03G07680 N 0.912
OGLUM03G27050 Oryza glumaepatula OGLUM03G27050 N 0.903
OGLUM07G20330 Oryza glumaepatula OGLUM07G20330 N 0.914
OGLUM09G03740 Oryza glumaepatula OGLUM09G03740 N 0.914
OLONG_006157 Oryza longistaminata OLONG_006157 N 0.914
OLONG_008046 Oryza longistaminata OLONG_008046 N 0.912
OLONG_010636 Oryza longistaminata OLONG_010636 N 0.903
OLONG_014997 Oryza longistaminata OLONG_014997 N 0.914
OMERI03G07360 Oryza meridionalis OMERI03G07360 N 0.912
OMERI03G23570 Oryza meridionalis OMERI03G23570 N 0.903
OMERI07G17220 Oryza meridionalis OMERI07G17220 N 0.914
OMERI12G12030 Oryza meridionalis OMERI12G12030 N 0.914
ONIVA03G07980 Oryza nivara ONIVA03G07980 N 0.912
ONIVA03G27180 Oryza nivara ONIVA03G27180 N 0.903
ONIVA07G18960 Oryza nivara ONIVA07G18960 N 0.914
ONIVA12G13790 Oryza nivara ONIVA12G13790 N 0.852
ONIVA12G15960 Oryza nivara ONIVA12G15960 N 0.914
OPUNC03G07300 Oryza punctata OPUNC03G07300 N 0.912
OPUNC03G23870 Oryza punctata OPUNC03G23870 N 0.903
OPUNC07G19390 Oryza punctata OPUNC07G19390 N 0.914
OPUNC12G15720 Oryza punctata OPUNC12G15720 N 0.914
orange1.1g036928m.g Citrus sinensis orange1.1g036928m.g N 0.914
orange1.1g047654m.g Citrus sinensis orange1.1g047654m.g N 0.914
ORGLA03G0073500 Oryza glaberrima ORGLA03G0073500 N 0.912
ORGLA03G0242600 Oryza glaberrima ORGLA03G0242600 N 0.903
ORGLA12G0149000 Oryza glaberrima ORGLA12G0149000 N 0.914
ORUFI03G07580 Oryza rufipogon ORUFI03G07580 N 0.912
ORUFI03G27070 Oryza rufipogon ORUFI03G27070 N 0.903
ORUFI07G21430 Oryza rufipogon ORUFI07G21430 N 0.914
ORUFI12G19280 Oryza rufipogon ORUFI12G19280 N 0.914
OS03G0205300 Oryza sativa OS03G0205300 N 0.912
OS07G0588400 Oryza sativa OS07G0588400 N 0.914
OS12G0589000 Oryza sativa OS12G0589000 N 0.914
Pavir.Ba01059 Panicum virgatum Pavir.Ba01059 N 0.903
Pavir.Bb01173 Panicum virgatum Pavir.Bb01173 N 0.903
Pavir.Ia00352 Panicum virgatum Pavir.Ia00352 N 0.914
Pavir.Ia04640 Panicum virgatum Pavir.Ia04640 N 0.914
Pavir.Ib00696 Panicum virgatum Pavir.Ib00696 N 0.914
Pavir.J00626 Panicum virgatum Pavir.J00626 N 0.914
PGSC0003DMG400021526 Solanum tuberosum PGSC0003DMG400021526 N 0.914
PGSC0003DMG400036714 Solanum tuberosum PGSC0003DMG400036714 N 0.914
PGSC0003DMG400039299 Solanum tuberosum PGSC0003DMG400039299 N 0.912
PK01802.1 Cannabis sativa PK01802.1 N 0.914
Pm005392 Prunus mume Pm005392 N 0.914
Pm021172 Prunus mume Pm021172 N 0.879
POPTR_0001s30150 Populus trichocarpa POPTR_0001s30150 N 0.914
POPTR_0002s12000 Populus trichocarpa POPTR_0002s12000 N 0.914
POPTR_0009s09210 Populus trichocarpa POPTR_0009s09210 N 0.914
POPTR_0014s01730 Populus trichocarpa POPTR_0014s01730 N 0.914
PRUPE_ppa015160mg Prunus persica PRUPE_ppa015160mg N 0.914
RSL2 Arabidopsis lyrata fgenesh2_kg.7__724__AT4G33880.1 N 0.914
RSL4 Arabidopsis lyrata fgenesh2_kg.1__2933__AT1G27740.1 N 0.879
SapurV1A.0005s0400 Salix purpurea SapurV1A.0005s0400 N 0.914
SapurV1A.0019s0320 Salix purpurea SapurV1A.0019s0320 N 0.914
SapurV1A.0476s0200 Salix purpurea SapurV1A.0476s0200 N 0.914
SapurV1A.0845s0110 Salix purpurea SapurV1A.0845s0110 N 0.869
SapurV1A.2301s0020 Salix purpurea SapurV1A.2301s0020 N 0.869
Sb01g007160 Sorghum bicolor Sb01g007160 N 0.914
Sb02g037990 Sorghum bicolor Sb02g037990 N 0.903
Sb05g025230 Sorghum bicolor Sb05g025230 N 0.912
SELMODRAFT_404767 Selaginella moellendorffii SELMODRAFT_404767 N 0.845
SELMODRAFT_419388 Selaginella moellendorffii SELMODRAFT_419388 N 0.845
Si032445m.g Setaria italica Si032445m.g N 0.903
Si039720m.g Setaria italica Si039720m.g N 0.914
Solyc01g107140.1 Solanum lycopersicum Solyc01g107140.1 N 0.914
Solyc04g077960.1 Solanum lycopersicum Solyc04g077960.1 N 0.914
TCM_007220 Theobroma cacao TCM_007220 N 0.914
TCM_034717 Theobroma cacao TCM_034717 N 0.914
Thhalv10003393m.g Eutrema salsugineum Thhalv10003393m.g N 0.894
Thhalv10009862m.g Eutrema salsugineum Thhalv10009862m.g N 0.879
Thhalv10026786m.g Eutrema salsugineum Thhalv10026786m.g N 0.914
Traes_2AS_9A3F73BE3 Triticum aestivum Traes_2AS_9A3F73BE3 N 0.882
Traes_2BS_659F9ABB9 Triticum aestivum Traes_2BS_659F9ABB9 N 0.882
Traes_2DS_7C9C33E09 Triticum aestivum Traes_2DS_7C9C33E09 N 0.882
Traes_4AL_6A6EC9A6A Triticum aestivum Traes_4AL_6A6EC9A6A N 0.879
Traes_4AS_7530AAEB4 Triticum aestivum Traes_4AS_7530AAEB4 N 0.845
Traes_4BS_9BFCC52AD Triticum aestivum Traes_4BS_9BFCC52AD N 0.879
Traes_4DL_61AE80723 Triticum aestivum Traes_4DL_61AE80723 N 0.845
Traes_4DS_7488F4608 Triticum aestivum Traes_4DS_7488F4608 N 0.879
Traes_5AS_5B9D5E067 Triticum aestivum Traes_5AS_5B9D5E067 N 0.914
Traes_5BL_E1D1D198E Triticum aestivum Traes_5BL_E1D1D198E N 0.838
Traes_5BS_0F8DBB33D Triticum aestivum Traes_5BS_0F8DBB33D N 0.890
Traes_5DS_51467BEB4 Triticum aestivum Traes_5DS_51467BEB4 N 0.914
TRIUR3_01454 Triticum urartu TRIUR3_01454 N 0.845
TRIUR3_17670 Triticum urartu TRIUR3_17670 N 0.882
TRIUR3_24341 Triticum urartu TRIUR3_24341 N 0.914
VIT_03s0091g00730 Vitis vinifera VIT_03s0091g00730 N 0.914
VIT_18s0001g09210 Vitis vinifera VIT_18s0001g09210 N 0.914