Gorai.005G252200 (Gossypium raimondii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gorai.005G252200 T049979_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK18401.1
M01126_2.00 		Cannabis sativa
NNNVCACGTGBN
NVCACGTGBNNN		 PBM
Lambert et al.(2019)
pTH11272 		0.914 0.922
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G252200.1 bHLH 58 108
Gorai.005G252200.2 bHLH 58 108
Gorai.005G252200.3 bHLH 58 108

Links

Other bHLH family TFs
Other Gossypium raimondii TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29711.m000322 Ricinus communis 29711.m000322 I 0.914
29830.m001386 Ricinus communis 29830.m001386 I 0.911
AMTR_s00041p00193340 Amborella trichopoda AMTR_s00041p00193340 I 0.911
AMTR_s00070p00188780 Amborella trichopoda AMTR_s00070p00188780 I 0.900
BGIOSGA008112 Oryza indica BGIOSGA008112 I 0.898
bHLH11 Vitis vinifera VIT_04s0023g03430 I 0.914
bHLH121 Vitis vinifera VIT_03s0038g01790 I 0.911
bHLH121 Arabidopsis lyrata fgenesh2_kg.3__2204__AT3G19860.1 I 0.844
BHLH121 Arabidopsis thaliana AT3G19860 I 0.844
Bo1g112310 Brassica oleracea Bo1g112310 I 0.844
Bostr.19424s0675 Boechera stricta Bostr.19424s0675 I 0.844
Bra038236 Brassica rapa Bra038236 I 0.844
BRADI3G11520 Brachypodium distachyon BRADI3G11520 I 0.839
Cagra.0316s0082 Capsella grandiflora Cagra.0316s0082 I 0.844
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I 0.914
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I 0.914
Ciclev10028783m.g Citrus clementina Ciclev10028783m.g I 0.903
Cla001685 Citrullus lanatus Cla001685 I 0.860
Cla014511 Citrullus lanatus Cla014511 I 0.914
Cucsa.043580 Cucumis sativus Cucsa.043580 I 0.914
Cucsa.169240 Cucumis sativus Cucsa.169240 I 0.887
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I 0.876
Eucgr.G01757 Eucalyptus grandis Eucgr.G01757 I 0.903
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I 0.914
evm.TU.supercontig_17.155 Carica papaya evm.TU.supercontig_17.155 I 0.854
evm.TU.supercontig_6.255 Carica papaya evm.TU.supercontig_6.255 I 0.876
fgenesh1_pg.scaffold_31000088 Physcomitrella patens fgenesh1_pg.scaffold_31000088 I 0.876
gene07391-v1.0-hybrid Fragaria vesca gene07391-v1.0-hybrid I 0.890
gene14608-v1.0-hybrid Fragaria vesca gene14608-v1.0-hybrid I 0.879
GLYMA07G26910 Glycine max GLYMA07G26910 I 0.882
GLYMA08G15740 Glycine max GLYMA08G15740 I 0.911
GLYMA12G02740 Glycine max GLYMA12G02740 I 0.890
GLYMA15G29630 Glycine max GLYMA15G29630 I 0.886
GRMZM2G114444 Zea mays GRMZM2G114444 I 0.863
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I 0.911
LPERR02G12290 Leersia perrieri LPERR02G12290 I 0.863
Lus10028456.g Linum usitatissimum Lus10028456.g I 0.911
Lus10041908.g Linum usitatissimum Lus10041908.g I 0.911
MDP0000275844 Malus domestica MDP0000275844 I 0.911
mgf017107m Mimulus guttatus mgf017107m I 0.885
MTR_4g075480 Medicago truncatula MTR_4g075480 I 0.876
OB0197G10010 Oryza brachyantha OB0197G10010 I 0.863
OPUNC02G13570 Oryza punctata OPUNC02G13570 I 0.898
orange1.1g022288m.g Citrus sinensis orange1.1g022288m.g I 0.903
OS02G0433600 Oryza sativa OS02G0433600 I 0.898
Pavir.Aa02015 Panicum virgatum Pavir.Aa02015 I 0.863
Pavir.Ab01730 Panicum virgatum Pavir.Ab01730 I 0.839
PGSC0003DMG400001594 Solanum tuberosum PGSC0003DMG400001594 I 0.873
PK18401.1 Cannabis sativa PK18401.1 D 0.914
Pm021043 Prunus mume Pm021043 I 0.911
Pm026758 Prunus mume Pm026758 I 0.914
POPTR_0004s17540 Populus trichocarpa POPTR_0004s17540 I 0.914
POPTR_0005s11550 Populus trichocarpa POPTR_0005s11550 I 0.876
POPTR_0009s13220 Populus trichocarpa POPTR_0009s13220 I 0.879
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I 0.911
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I 0.914
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I 0.902
SapurV1A.1150s0140 Salix purpurea SapurV1A.1150s0140 I 0.890
Sb03g028030 Sorghum bicolor Sb03g028030 I 0.863
Si017804m.g Setaria italica Si017804m.g I 0.863
Solyc01g111130.2 Solanum lycopersicum Solyc01g111130.2 I 0.873
TCM_000204 Theobroma cacao TCM_000204 I 0.911
TCM_006692 Theobroma cacao TCM_006692 I 0.903
Thhalv10021271m.g Eutrema salsugineum Thhalv10021271m.g I 0.844
Thhalv10023630m.g Eutrema salsugineum Thhalv10023630m.g I 0.844