CBN22561 (Caenorhabditis brenneri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 CBN22561 T083063_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ces-1
M00608_2.00 		Caenorhabditis elegans
CCTGTTG
CAACAGG		 PBM
Narasimhan et al.(2015)
pTH9158 		0.818 0.947
ces-1
M09518_2.00 		Caenorhabditis elegans
NWAATYNRATTW
WAATYNRATTWN		 Misc
Heinz et al.(2010)
cElegans-L1-CES1_modEncode 		0.818 0.947
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN22561 C2H2 ZF 121 143
CBN22561 C2H2 ZF 152 174
CBN22561 C2H2 ZF 178 200
CBN22561 C2H2 ZF 206 228
CBN22561 C2H2 ZF 234 255

Links

Other C2H2 ZF family TFs
Other Caenorhabditis brenneri TFs

3 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004746 Ricinus communis 29929.m004746 N
30147.m013794 Ricinus communis 30147.m013794 N
Ca_08777 Cicer arietinum Ca_08777 N
Ciclev10019777m.g Citrus clementina Ciclev10019777m.g N
Ciclev10031305m.g Citrus clementina Ciclev10031305m.g N
Cla019540 Citrullus lanatus Cla019540 N
Cucsa.196250 Cucumis sativus Cucsa.196250 N
Eucgr.H04688 Eucalyptus grandis Eucgr.H04688 N
gene22702-v1.0-hybrid Fragaria vesca gene22702-v1.0-hybrid N
GLYMA05G03020 Glycine max GLYMA05G03020 N
GLYMA17G13680 Glycine max GLYMA17G13680 N
Gorai.006G270800 Gossypium raimondii Gorai.006G270800 N
GSMUA_Achr8G01180_001 Musa acuminata GSMUA_Achr8G01180_001 N
Lus10017930.g Linum usitatissimum Lus10017930.g N
Lus10036932.g Linum usitatissimum Lus10036932.g N
Lus10037055.g Linum usitatissimum Lus10037055.g N
mgf020930m Mimulus guttatus mgf020930m N
MTR_4g104020 Medicago truncatula MTR_4g104020 N
orange1.1g037028m.g Citrus sinensis orange1.1g037028m.g N
orange1.1g040125m.g Citrus sinensis orange1.1g040125m.g N
Pavir.J35085 Panicum virgatum Pavir.J35085 N
PGSC0003DMG400015255 Solanum tuberosum PGSC0003DMG400015255 N
PK09859.1 Cannabis sativa PK09859.1 N
Pm006846 Prunus mume Pm006846 N
Pm024459 Prunus mume Pm024459 N
POPTR_0012s09550 Populus trichocarpa POPTR_0012s09550 N
POPTR_0015s10310 Populus trichocarpa POPTR_0015s10310 N
PRUPE_ppa016418mg Prunus persica PRUPE_ppa016418mg N
PRUPE_ppa026722mg Prunus persica PRUPE_ppa026722mg N
Solyc03g110950.1 Solanum lycopersicum Solyc03g110950.1 N
TCM_010708 Theobroma cacao TCM_010708 N
TCM_014574 Theobroma cacao TCM_014574 N
VIT_17s0000g10300 Vitis vinifera VIT_17s0000g10300 N