ENSXMAG00000011590 (Xiphophorus maculatus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSXMAG00000011590 T113895_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.792 0.841
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.792 0.841
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.792 0.841
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.792 0.841
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.788 0.832
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.788 0.832
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.788 0.832
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.785 0.885
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.785 0.885
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.785 0.885
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.785 0.885
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.784 0.858
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.784 0.858
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.784 0.858
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000011608 C2H2 ZF 169 191
ENSXMAP00000011608 C2H2 ZF 201 222
ENSXMAP00000011608 C2H2 ZF 226 248
ENSXMAP00000011608 C2H2 ZF 254 276
ENSXMAP00000011608 C2H2 ZF 282 303

Links

Other C2H2 ZF family TFs
Other Xiphophorus maculatus TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29711.m000322 Ricinus communis 29711.m000322 I 0.000
29830.m001386 Ricinus communis 29830.m001386 I 0.000
AMTR_s00041p00193340 Amborella trichopoda AMTR_s00041p00193340 I 0.000
AMTR_s00070p00188780 Amborella trichopoda AMTR_s00070p00188780 I 0.000
BGIOSGA008112 Oryza indica BGIOSGA008112 I 0.000
bHLH11 Vitis vinifera VIT_04s0023g03430 I 0.000
bHLH121 Vitis vinifera VIT_03s0038g01790 I 0.000
bHLH121 Arabidopsis lyrata fgenesh2_kg.3__2204__AT3G19860.1 I 0.000
BHLH121 Arabidopsis thaliana AT3G19860 I 0.000
Bo1g112310 Brassica oleracea Bo1g112310 I 0.000
Bostr.19424s0675 Boechera stricta Bostr.19424s0675 I 0.000
Bra038236 Brassica rapa Bra038236 I 0.000
BRADI3G11520 Brachypodium distachyon BRADI3G11520 I 0.000
Cagra.0316s0082 Capsella grandiflora Cagra.0316s0082 I 0.000
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I 0.000
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I 0.000
Ciclev10028783m.g Citrus clementina Ciclev10028783m.g I 0.000
Cla014511 Citrullus lanatus Cla014511 I 0.000
Cucsa.043580 Cucumis sativus Cucsa.043580 I 0.000
Cucsa.169240 Cucumis sativus Cucsa.169240 I 0.000
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I 0.000
Eucgr.G01757 Eucalyptus grandis Eucgr.G01757 I 0.000
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I 0.000
evm.TU.supercontig_6.255 Carica papaya evm.TU.supercontig_6.255 I 0.000
fgenesh1_pg.scaffold_31000088 Physcomitrella patens fgenesh1_pg.scaffold_31000088 I 0.000
gene07391-v1.0-hybrid Fragaria vesca gene07391-v1.0-hybrid I 0.000
gene14608-v1.0-hybrid Fragaria vesca gene14608-v1.0-hybrid I 0.000
GLYMA07G26910 Glycine max GLYMA07G26910 I 0.000
GLYMA08G15740 Glycine max GLYMA08G15740 I 0.000
GLYMA12G02740 Glycine max GLYMA12G02740 I 0.000
GLYMA15G29630 Glycine max GLYMA15G29630 I 0.000
Gorai.005G252200 Gossypium raimondii Gorai.005G252200 I 0.000
GRMZM2G114444 Zea mays GRMZM2G114444 I 0.000
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I 0.000
LPERR02G12290 Leersia perrieri LPERR02G12290 I 0.000
Lus10028456.g Linum usitatissimum Lus10028456.g I 0.000
Lus10041908.g Linum usitatissimum Lus10041908.g I 0.000
MDP0000275844 Malus domestica MDP0000275844 I 0.000
mgf017107m Mimulus guttatus mgf017107m I 0.000
MTR_4g075480 Medicago truncatula MTR_4g075480 I 0.000
OB0197G10010 Oryza brachyantha OB0197G10010 I 0.000
OPUNC02G13570 Oryza punctata OPUNC02G13570 I 0.000
orange1.1g022288m.g Citrus sinensis orange1.1g022288m.g I 0.000
OS02G0433600 Oryza sativa OS02G0433600 I 0.000
Pavir.Aa02015 Panicum virgatum Pavir.Aa02015 I 0.000
Pavir.Ab01730 Panicum virgatum Pavir.Ab01730 I 0.000
PGSC0003DMG400001594 Solanum tuberosum PGSC0003DMG400001594 I 0.000
PK18401.1 Cannabis sativa PK18401.1 D 0.000
Pm021043 Prunus mume Pm021043 I 0.000
Pm026758 Prunus mume Pm026758 I 0.000
POPTR_0004s17540 Populus trichocarpa POPTR_0004s17540 I 0.000
POPTR_0009s13220 Populus trichocarpa POPTR_0009s13220 I 0.000
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I 0.000
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I 0.000
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I 0.000
SapurV1A.1150s0140 Salix purpurea SapurV1A.1150s0140 I 0.000
Sb03g028030 Sorghum bicolor Sb03g028030 I 0.000
Si017804m.g Setaria italica Si017804m.g I 0.000
Solyc01g111130.2 Solanum lycopersicum Solyc01g111130.2 I 0.000
TCM_000204 Theobroma cacao TCM_000204 I 0.000
TCM_006692 Theobroma cacao TCM_006692 I 0.000
Thhalv10021271m.g Eutrema salsugineum Thhalv10021271m.g I 0.000
Thhalv10023630m.g Eutrema salsugineum Thhalv10023630m.g I 0.000