PGSC0003DMG400045547 (Solanum tuberosum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 PGSC0003DMG400045547 T125854_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.778 0.810
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.769 0.690
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.769 0.667
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.762 0.762
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.762 0.762
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.759 0.786
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.757 0.762
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.757 0.762
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.757 0.762
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400095976 C2H2 ZF 49 71
PGSC0003DMT400095976 C2H2 ZF 109 127

Links

Other C2H2 ZF family TFs
Other Solanum tuberosum TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28152.m000908 Ricinus communis 28152.m000908 I 0.778
30170.m013751 Ricinus communis 30170.m013751 I 0.776
AZF1 Arabidopsis thaliana AT5G67450 D 0.762
AZF2 Arabidopsis thaliana AT3G19580 D 0.778
AZF2 Arabidopsis lyrata fgenesh2_kg.3__2173__AT3G19580.2 I 0.783
Bo1g081350 Brassica oleracea Bo1g081350 I 0.767
Bo1g113530 Brassica oleracea Bo1g113530 I 0.783
Bo2g168030 Brassica oleracea Bo2g168030 I 0.762
Bo3g142840 Brassica oleracea Bo3g142840 I 0.757
Bo5g113850 Brassica oleracea Bo5g113850 I 0.783
Bo7g048650 Brassica oleracea Bo7g048650 I 0.757
Bo9g019120 Brassica oleracea Bo9g019120 I 0.762
Bo9g181170 Brassica oleracea Bo9g181170 I 0.759
Bostr.13158s0058 Boechera stricta Bostr.13158s0058 I 0.769
Bostr.15697s0099 Boechera stricta Bostr.15697s0099 I 0.757
Bostr.19424s0704 Boechera stricta Bostr.19424s0704 I 0.783
Bostr.2128s0015 Boechera stricta Bostr.2128s0015 I 0.759
Bostr.25993s0262 Boechera stricta Bostr.25993s0262 I 0.769
Bostr.26675s0176 Boechera stricta Bostr.26675s0176 I 0.758
Bostr.3148s0159 Boechera stricta Bostr.3148s0159 I 0.759
Bra009464 Brassica rapa Bra009464 I 0.759
Bra010922 Brassica rapa Bra010922 I 0.757
Bra012914 Brassica rapa Bra012914 I 0.767
Bra022436 Brassica rapa Bra022436 I 0.783
Bra029985 Brassica rapa Bra029985 I 0.767
Bra031834 Brassica rapa Bra031834 I 0.762
Bra037845 Brassica rapa Bra037845 I 0.762
Bra038219 Brassica rapa Bra038219 I 0.783
C2H2 Arabidopsis lyrata scaffold_600374.1 I 0.759
Cagra.0239s0063 Capsella grandiflora Cagra.0239s0063 I 0.769
Cagra.6011s0004 Capsella grandiflora Cagra.6011s0004 I 0.769
Cagra.6943s0031 Capsella grandiflora Cagra.6943s0031 I 0.783
Carubv10014391m.g Capsella rubella Carubv10014391m.g I 0.783
Carubv10017660m.g Capsella rubella Carubv10017660m.g I 0.769
Carubv10023569m.g Capsella rubella Carubv10023569m.g I 0.769
cassava12475.valid.m1 Manihot esculenta cassava12475.valid.m1 I 0.777
cassava35732.valid.m1 Manihot esculenta cassava35732.valid.m1 I 0.783
cassava43667.valid.m1 Manihot esculenta cassava43667.valid.m1 I 0.778
Ca_01586 Cicer arietinum Ca_01586 I 0.783
Ca_18364 Cicer arietinum Ca_18364 I 0.783
Ca_23672 Cicer arietinum Ca_23672 I 0.763
chr1.CM0050.50.nc Lotus japonicus chr1.CM0050.50.nc I 0.759
chr1.LjT45O14.140.nd Lotus japonicus chr1.LjT45O14.140.nd I 0.759
chr5.CM0096.480.nc Lotus japonicus chr5.CM0096.480.nc I 0.783
chr5.CM0200.550.nc Lotus japonicus chr5.CM0200.550.nc I 0.783
Ciclev10002297m.g Citrus clementina Ciclev10002297m.g I 0.783
Ciclev10020499m.g Citrus clementina Ciclev10020499m.g I 0.763
Ciclev10029065m.g Citrus clementina Ciclev10029065m.g I 0.783
Cucsa.352740 Cucumis sativus Cucsa.352740 I 0.759
Eucgr.G01247 Eucalyptus grandis Eucgr.G01247 I 0.783
evm.TU.supercontig_2070.1 Carica papaya evm.TU.supercontig_2070.1 I 0.763
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I 0.759
evm.TU.supercontig_6.32 Carica papaya evm.TU.supercontig_6.32 I 0.762
fgenesh2_kg.4__2705__AT2G45120.1 Arabidopsis lyrata fgenesh2_kg.4__2705__AT2G45120.1 I 0.769
gene02558-v1.0-hybrid Fragaria vesca gene02558-v1.0-hybrid I 0.783
GLYMA01G18606 Glycine max GLYMA01G18606 I 0.763
GLYMA01G32981 Glycine max GLYMA01G32981 I 0.763
GLYMA03G03950 Glycine max GLYMA03G03950 I 0.763
GLYMA04G04760 Glycine max GLYMA04G04760 I 0.783
GLYMA06G04840 Glycine max GLYMA06G04840 I 0.783
GLYMA14G09760 Glycine max GLYMA14G09760 I 0.783
GLYMA17G35430 Glycine max GLYMA17G35430 I 0.783
Gorai.001G175400 Gossypium raimondii Gorai.001G175400 I 0.763
Gorai.002G132600 Gossypium raimondii Gorai.002G132600 I 0.783
Gorai.004G164000 Gossypium raimondii Gorai.004G164000 I 0.764
Gorai.005G232300 Gossypium raimondii Gorai.005G232300 I 0.759
Gorai.008G020700 Gossypium raimondii Gorai.008G020700 I 0.783
Gorai.010G025200 Gossypium raimondii Gorai.010G025200 I 0.783
Gorai.013G050100 Gossypium raimondii Gorai.013G050100 I 0.783
GRMZM2G455889 Zea mays GRMZM2G455889 I 0.760
GSMUA_Achr2G13410_001 Musa acuminata GSMUA_Achr2G13410_001 I 0.761
GSMUA_Achr5G08730_001 Musa acuminata GSMUA_Achr5G08730_001 I 0.763
LPERR03G21480 Leersia perrieri LPERR03G21480 I 0.763
Lus10009278.g Linum usitatissimum Lus10009278.g I 0.763
Lus10015888.g Linum usitatissimum Lus10015888.g I 0.763
MDP0000198015 Malus domestica MDP0000198015 I 0.783
MDP0000319225 Malus domestica MDP0000319225 I 0.783
MDP0000573176 Malus domestica MDP0000573176 I 0.783
MDP0000762756 Malus domestica MDP0000762756 I 0.783
mgf006006m Mimulus guttatus mgf006006m I 0.781
MTR_0160s0030 Medicago truncatula MTR_0160s0030 I 0.763
MTR_1g018420 Medicago truncatula MTR_1g018420 I 0.782
MTR_1g106730 Medicago truncatula MTR_1g106730 I 0.783
MTR_3g102980 Medicago truncatula MTR_3g102980 I 0.783
MTR_4g027440 Medicago truncatula MTR_4g027440 I 0.769
OB03G42170 Oryza brachyantha OB03G42170 I 0.769
orange1.1g024499m.g Citrus sinensis orange1.1g024499m.g I 0.783
orange1.1g038669m.g Citrus sinensis orange1.1g038669m.g I 0.783
orange1.1g044606m.g Citrus sinensis orange1.1g044606m.g I 0.763
PGSC0003DMG400002383 Solanum tuberosum PGSC0003DMG400002383 I 0.788
PGSC0003DMG400011548 Solanum tuberosum PGSC0003DMG400011548 I 0.783
PGSC0003DMG400028275 Solanum tuberosum PGSC0003DMG400028275 I 0.792
PGSC0003DMG400041467 Solanum tuberosum PGSC0003DMG400041467 I 0.783
PK10188.1 Cannabis sativa PK10188.1 I 0.783
Pm005390 Prunus mume Pm005390 I 0.783
Pm021284 Prunus mume Pm021284 I 0.783
POPTR_0002s12010 Populus trichocarpa POPTR_0002s12010 I 0.782
POPTR_0002s14460 Populus trichocarpa POPTR_0002s14460 I 0.763
POPTR_0009s09250 Populus trichocarpa POPTR_0009s09250 I 0.778
POPTR_0014s01760 Populus trichocarpa POPTR_0014s01760 I 0.783
PRUPE_ppa009924mg Prunus persica PRUPE_ppa009924mg I 0.783
PRUPE_ppa011060mg Prunus persica PRUPE_ppa011060mg I 0.783
SapurV1A.0005s0440 Salix purpurea SapurV1A.0005s0440 I 0.778
SapurV1A.0019s0280 Salix purpurea SapurV1A.0019s0280 I 0.778
SapurV1A.0033s0440 Salix purpurea SapurV1A.0033s0440 I 0.762
SapurV1A.0248s0230 Salix purpurea SapurV1A.0248s0230 I 0.763
SapurV1A.0845s0100 Salix purpurea SapurV1A.0845s0100 I 0.783
scaffold_503291.1 Arabidopsis lyrata scaffold_503291.1 I 0.769
Solyc12g088390.1 Solanum lycopersicum Solyc12g088390.1 I 0.781
STZ Arabidopsis lyrata fgenesh2_kg.1__2932__AT1G27730.1 I 0.757
TCM_007214 Theobroma cacao TCM_007214 I 0.783
TCM_034720 Theobroma cacao TCM_034720 I 0.783
Thhalv10010909m.g Eutrema salsugineum Thhalv10010909m.g I 0.767
Thhalv10014546m.g Eutrema salsugineum Thhalv10014546m.g I 0.759
Thhalv10021307m.g Eutrema salsugineum Thhalv10021307m.g I 0.783
VIT_03s0091g00690 Vitis vinifera VIT_03s0091g00690 I 0.777
VIT_07s0129g00240 Vitis vinifera VIT_07s0129g00240 I 0.781
VIT_15s0021g02720 Vitis vinifera VIT_15s0021g02720 I 0.763
VIT_18s0001g09230 Vitis vinifera VIT_18s0001g09230 I 0.783
ZAT10 Arabidopsis thaliana AT1G27730 D 0.757
ZAT4 Arabidopsis thaliana AT2G45120 D 0.769
ZAT6 Arabidopsis thaliana AT5G04340 D 0.759
ZAT9 Arabidopsis thaliana AT3G60580 D 0.769