gene05169-v1.0-hybrid (Fragaria vesca)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 gene05169-v1.0-hybrid T142947_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.767 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna05169.1-v1.0-hybrid C2H2 ZF 42 64

Links

Other C2H2 ZF family TFs
Other Fragaria vesca TFs

99 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29681.m001315 Ricinus communis 29681.m001315 N
29917.m001977 Ricinus communis 29917.m001977 I
30147.m013937 Ricinus communis 30147.m013937 I
AMTR_s00001p00272410 Amborella trichopoda AMTR_s00001p00272410 N
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I
Aquca_045_00020 Aquilegia coerulea Aquca_045_00020 I
BGIOSGA022369 Oryza indica BGIOSGA022369 I
BGIOSGA036541 Oryza indica BGIOSGA036541 I
Bo2g144970 Brassica oleracea Bo2g144970 I
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I
Bostr.20821s0001 Boechera stricta Bostr.20821s0001 N
Bra025299 Brassica rapa Bra025299 I
Bra033027 Brassica rapa Bra033027 I
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I
Carubv10018693m.g Capsella rubella Carubv10018693m.g I
cassava19706.m1 Manihot esculenta cassava19706.m1 I
cassava26507.m1 Manihot esculenta cassava26507.m1 N
cassava26674.m1 Manihot esculenta cassava26674.m1 N
cassava33974.m1 Manihot esculenta cassava33974.m1 I
Ca_17087 Cicer arietinum Ca_17087 I
Ca_17294 Cicer arietinum Ca_17294 I
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N
Cla008304 Citrullus lanatus Cla008304 N
Cla010586 Citrullus lanatus Cla010586 I
Cla019490 Citrullus lanatus Cla019490 I
Cucsa.146980 Cucumis sativus Cucsa.146980 N
Cucsa.196850 Cucumis sativus Cucsa.196850 I
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I
evm.TU.supercontig_108.29 Carica papaya evm.TU.supercontig_108.29 I
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I
F775_22212 Aegilops tauschii F775_22212 I
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I
GLYMA05G02300 Glycine max GLYMA05G02300 I
GLYMA05G08761 Glycine max GLYMA05G08761 N
GLYMA06G19280 Glycine max GLYMA06G19280 I
GLYMA16G07927 Glycine max GLYMA16G07927 I
GLYMA18G07360 Glycine max GLYMA18G07360 N
GLYMA19G13923 Glycine max GLYMA19G13923 I
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N
GRMZM5G870592 Zea mays GRMZM5G870592 I
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I
GSMUA_Achr6G06490_001 Musa acuminata GSMUA_Achr6G06490_001 I
GSMUA_Achr6G33700_001 Musa acuminata GSMUA_Achr6G33700_001 N
GSMUA_Achr8G02290_001 Musa acuminata GSMUA_Achr8G02290_001 N
LPERR06G03780 Leersia perrieri LPERR06G03780 I
Lus10002384.g Linum usitatissimum Lus10002384.g I
Lus10018220.g Linum usitatissimum Lus10018220.g N
Lus10027695.g Linum usitatissimum Lus10027695.g I
Lus10040684.g Linum usitatissimum Lus10040684.g N
Lus10042111.g Linum usitatissimum Lus10042111.g I
MDP0000199939 Malus domestica MDP0000199939 I
MDP0000215359 Malus domestica MDP0000215359 I
MDP0000319656 Malus domestica MDP0000319656 I
mg025334m Mimulus guttatus mg025334m I
mgf024290m Mimulus guttatus mgf024290m I
MTR_3g077650 Medicago truncatula MTR_3g077650 I
MTR_3g463400 Medicago truncatula MTR_3g463400 N
MTR_4g105660 Medicago truncatula MTR_4g105660 N
MTR_5g049190 Medicago truncatula MTR_5g049190 I
MTR_5g070020 Medicago truncatula MTR_5g070020 N
MYB118 Arabidopsis thaliana AT3G27785 D
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I
MYB118 Populus trichocarpa POPTR_0001s35140 I
MYB98 Vitis vinifera VIT_17s0000g08550 I
OB06G13860 Oryza brachyantha OB06G13860 I
OBART06G04170 Oryza barthii OBART06G04170 I
OBART12G04480 Oryza barthii OBART12G04480 I
OBART12G04500 Oryza barthii OBART12G04500 I
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I
OGLUM12G05330 Oryza glumaepatula OGLUM12G05330 I
OLONG_008158 Oryza longistaminata OLONG_008158 I
OLONG_010000 Oryza longistaminata OLONG_010000 I
OMERI06G04840 Oryza meridionalis OMERI06G04840 I
OMERI12G02760 Oryza meridionalis OMERI12G02760 I
ONIVA06G05390 Oryza nivara ONIVA06G05390 I
ONIVA12G04220 Oryza nivara ONIVA12G04220 I
OPUNC06G03990 Oryza punctata OPUNC06G03990 I
OPUNC12G04510 Oryza punctata OPUNC12G04510 I
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I
ORGLA12G0042300 Oryza glaberrima ORGLA12G0042300 I
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I
ORUFI12G05180 Oryza rufipogon ORUFI12G05180 I
OS06G0162700 Oryza sativa OS06G0162700 I
Pavir.J02497 Panicum virgatum Pavir.J02497 I
Pavir.J02718 Panicum virgatum Pavir.J02718 I
Pavir.J25000 Panicum virgatum Pavir.J25000 I
Pavir.J37434 Panicum virgatum Pavir.J37434 I
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I
PGSC0003DMG400044141 Solanum tuberosum PGSC0003DMG400044141 N
Pm000541 Prunus mume Pm000541 I
Pm015681 Prunus mume Pm015681 I
Pm024743 Prunus mume Pm024743 I
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I
SapurV1A.0041s0840 Salix purpurea SapurV1A.0041s0840 N
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I
SapurV1A.0772s0150 Salix purpurea SapurV1A.0772s0150 N
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I
Sb01g005100 Sorghum bicolor Sb01g005100 I
Si039046m.g Setaria italica Si039046m.g I
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I
Solyc06g076840.1 Solanum lycopersicum Solyc06g076840.1 N
TCM_012087 Theobroma cacao TCM_012087 I
TCM_016909 Theobroma cacao TCM_016909 I
TCM_041651 Theobroma cacao TCM_041651 N
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I
TRIUR3_12421 Triticum urartu TRIUR3_12421 I
VIT_14s0066g01010 Vitis vinifera VIT_14s0066g01010 I