SapurV1A.2546s0020 (Salix purpurea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 SapurV1A.2546s0020 T143516_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IDD4
M06809_2.00 		Arabidopsis thaliana
WWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWW		 Dap-seq
OMalley et al.(2016)
IDD4_col_a 		0.827 0.977
MGP
M06795_2.00 		Arabidopsis thaliana
HNHDWTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAWHDND		 Dap-seq
OMalley et al.(2016)
MGP_col_a 		0.827 0.977
MGP
M06796_2.00 		Arabidopsis thaliana
NNDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHNN		 Dap-seq
OMalley et al.(2016)
MGP_colamp_a 		0.827 0.977
IDD7
M06803_2.00 		Arabidopsis thaliana
NDDTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAHHN		 Dap-seq
OMalley et al.(2016)
IDD7_col_a 		0.827 0.930
AT1G14580
M06797_2.00 		Arabidopsis thaliana
NNNWWTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAWWNNN		 Dap-seq
OMalley et al.(2016)
At1g14580_col_a 		0.822 0.953
AT1G14580
M06798_2.00 		Arabidopsis thaliana
NNTTTTGTCKTTTWSYD
HRSWAAAMGACAAAANN		 Dap-seq
OMalley et al.(2016)
At1g14580_colamp_a 		0.822 0.953
IDD5
M06807_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTTSYD
HRSAAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
IDD5_colamp_a 		0.822 0.953
IDD5
M06808_2.00 		Arabidopsis thaliana
WTTTTGTCKTTTWSYD
HRSWAAAMGACAAAAW		 Dap-seq
OMalley et al.(2016)
IDD5_col 		0.822 0.953
NUC
M06822_2.00 		Arabidopsis thaliana
NNNNNTTTTGTCKTYTWBYD
HRVWARAMGACAAAANNNNN		 Dap-seq
OMalley et al.(2016)
NUC_col_a 		0.803 0.953
NUC
M06823_2.00 		Arabidopsis thaliana
NDTTTTGTCGTYTWNYD
HRNWARACGACAAAAHN		 Dap-seq
OMalley et al.(2016)
NUC_colamp_a 		0.803 0.953
JKD
M06818_2.00 		Arabidopsis thaliana
HHNWWTTTTGTCKTTTWBYD
HRVWAAAMGACAAAAWWNDD		 Dap-seq
OMalley et al.(2016)
JKD_col_a 		0.797 0.907
IDD1
M06824_2.00 		Arabidopsis thaliana
DNTTTTGTCKTTTWBYD
HRVWAAAMGACAAAANH		 Dap-seq
OMalley et al.(2016)
At5g66730_colamp_a 		0.794 0.907
IDD1
M06825_2.00 		Arabidopsis thaliana
WDTTTTGTCKTTTWNYD
HRNWAAAMGACAAAAHW		 Dap-seq
OMalley et al.(2016)
At5g66730_col 		0.794 0.907
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.2546s0020.1.p C2H2 ZF 134 155
SapurV1A.2546s0020.1.p C2H2 ZF 154 180

Links

Other C2H2 ZF family TFs
Other Salix purpurea TFs

645 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004641 Ricinus communis 29929.m004641 I
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I
BGIOSGA007643 Oryza indica BGIOSGA007643 N
Bo7g065290 Brassica oleracea Bo7g065290 N
Bo9g058970 Brassica oleracea Bo9g058970 N
Bra027478 Brassica rapa Bra027478 N
Bra033671 Brassica rapa Bra033671 N
BRADI3G03510 Brachypodium distachyon BRADI3G03510 N
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N
Carubv10026434m.g Capsella rubella Carubv10026434m.g N
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N
Ca_11356 Cicer arietinum Ca_11356 I
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I
F775_31908 Aegilops tauschii F775_31908 N
GLYMA11G36980 Glycine max GLYMA11G36980 N
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N
Gorai.005G166500 Gossypium raimondii Gorai.005G166500 N
GRMZM2G065451 Zea mays GRMZM2G065451 N
GRMZM2G097275 Zea mays GRMZM2G097275 N
GRMZM2G126827 Zea mays GRMZM2G126827 N
GRMZM2G156621 Zea mays GRMZM2G156621 N
GRMZM2G163813 Zea mays GRMZM2G163813 N
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N
GSMUA_Achr3G27750_001 Musa acuminata GSMUA_Achr3G27750_001 N
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N
LPERR02G02980 Leersia perrieri LPERR02G02980 N
LPERR02G04880 Leersia perrieri LPERR02G04880 N
LPERR06G22200 Leersia perrieri LPERR06G22200 N
Lus10006411.g Linum usitatissimum Lus10006411.g I
Lus10011356.g Linum usitatissimum Lus10011356.g I
Lus10021614.g Linum usitatissimum Lus10021614.g N
MDP0000155354 Malus domestica MDP0000155354 N
mgf010397m Mimulus guttatus mgf010397m N
mgf019346m Mimulus guttatus mgf019346m I
MLOC_11199 Hordeum vulgare MLOC_11199 N
MLOC_62426 Hordeum vulgare MLOC_62426 N
MTR_3g085180 Medicago truncatula MTR_3g085180 N
OB02G12930 Oryza brachyantha OB02G12930 N
OB02G14840 Oryza brachyantha OB02G14840 N
OBART02G03260 Oryza barthii OBART02G03260 N
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N
OLONG_025693 Oryza longistaminata OLONG_025693 N
OMERI02G03900 Oryza meridionalis OMERI02G03900 N
OMERI02G06420 Oryza meridionalis OMERI02G06420 N
ONIVA02G03070 Oryza nivara ONIVA02G03070 N
ONIVA02G05960 Oryza nivara ONIVA02G05960 N
OPUNC02G02570 Oryza punctata OPUNC02G02570 N
OPUNC02G04800 Oryza punctata OPUNC02G04800 N
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N
OS02G0139400 Oryza sativa OS02G0139400 N
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N
Pavir.J20730 Panicum virgatum Pavir.J20730 N
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N
PK16953.1 Cannabis sativa PK16953.1 N
Pm007020 Prunus mume Pm007020 N
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I
POPTR_0018s14680 Populus trichocarpa POPTR_0018s14680 N
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I
SapurV1A.0430s0160 Salix purpurea SapurV1A.0430s0160 N
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I
Sb04g004940 Sorghum bicolor Sb04g004940 N
Si017749m.g Setaria italica Si017749m.g N
Solyc05g015510.2 Solanum lycopersicum Solyc05g015510.2 N
SPL2 Vitis vinifera VIT_11s0065g00170 N
SPL2 Arabidopsis thaliana AT5G43270 N
SPL2 Arabidopsis lyrata scaffold_800740.1 N
SPL3 Oryza indica BGIOSGA007499 N
SPL4 Oryza sativa OS02G0174100 N
TCM_008772 Theobroma cacao TCM_008772 N
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N
Traes_6DS_7B1596298 Triticum aestivum Traes_6DS_7B1596298 N
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I