MhA1_Contig1668.frz3.gene4 (Meloidogyne hapla)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 MhA1_Contig1668.frz3.gene4 T154964_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
klu
M03680_2.00 		Drosophila melanogaster
HCCRCCCACGCAH
DTGCGTGGGYGGD		 SELEX
Nitta et al.(2015)
klu_1 		0.773 0.793
klu
M03681_2.00 		Drosophila melanogaster
YMCGCCCMCGCAH
DTGCGKGGGCGKR		 SELEX
Nitta et al.(2015)
klu_2 		0.773 0.793
klu
M06114_2.00 		Drosophila melanogaster
MCACCCMCRCA
TGYGKGGGTGK		 B1H
Zhu et al.(2011)
klu_SANGER_10_FBgn0013469 		0.773 0.793
klu
M06115_2.00 		Drosophila melanogaster
NNNNMCACCCMCRCN
NGYGKGGGTGKNNNN		 B1H
Zhu et al.(2011)
klu_SOLEXA_5_FBgn0013469 		0.773 0.793
klu-1
M00637_2.00 		Caenorhabditis elegans
CDCCCMCV
BGKGGGHG		 PBM
Narasimhan et al.(2015)
pTH9355 		0.761 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MhA1_Contig1668.frz3.gene4 C2H2 ZF 232 255
MhA1_Contig1668.frz3.gene4 C2H2 ZF 270 292
MhA1_Contig1668.frz3.gene4 C2H2 ZF 298 320
MhA1_Contig1668.frz3.gene4 C2H2 ZF 326 348

Links

Other C2H2 ZF family TFs
Other Meloidogyne hapla TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP27848 Atta cephalotes ACEP27848 I 0.768
ACYPI004750 Acyrthosiphon pisum ACYPI004750 I 0.773
ANCCAN_10701 Ancylostoma caninum ANCCAN_10701 I 0.785
ASU_11043 Ascaris suum ASU_11043 I 0.801
BGIBMGA002090 Bombyx mori BGIBMGA002090 N 0.764
Bm9026 Brugia malayi Bm9026 I 0.803
BXY_0483000 Bursaphelenchus xylophilus BXY_0483000 I 0.792
CBG19812 Caenorhabditis briggsae CBG19812 I 0.761
CBN12312 Caenorhabditis brenneri CBN12312 I 0.761
CBN30915 Caenorhabditis brenneri CBN30915 I 0.761
CGOC_0000202301 Cylicostephanus goldi CGOC_0000202301 I 0.785
CJA16091 Caenorhabditis japonica CJA16091 I 0.761
CLEC001135 Cimex lectularius CLEC001135 I 0.773
CRE13956 Caenorhabditis remanei CRE13956 I 0.761
EEL_0000130601 Elaeophora elaphi EEL_0000130601 I 0.803
GA23784 Drosophila pseudoobscura FBgn0245183 I 0.773
GB42180 Apis mellifera GB42180 I 0.773
GD12837 Drosophila simulans FBgn0184562 I 0.773
GE20250 Drosophila yakuba FBgn0237569 I 0.773
GF23812 Drosophila ananassae FBgn0100806 I 0.773
GG13951 Drosophila erecta FBgn0106213 I 0.773
GH16578 Drosophila grimshawi FBgn0124049 I 0.773
GI13870 Drosophila mojavensis FBgn0136624 I 0.773
GJ11729 Drosophila virilis FBgn0198983 I 0.773
GK18880 Drosophila willistoni FBgn0220878 I 0.773
GL15747 Drosophila persimilis FBgn0153351 I 0.773
GM24789 Drosophila sechellia FBgn0179651 I 0.773
GPLIN_001505900 Globodera pallida GPLIN_001505900 I 0.788
HCOI02146900 Haemonchus contortus HCOI02146900 I 0.785
HHAL008432-PA Halyomorpha halys HHAL008432-PA I 0.773
ISCW010362 Ixodes scapularis ISCW010362 I 0.770
KGM_08766 Danaus plexippus KGM_08766 N 0.760
klu Drosophila melanogaster FBgn0013469 D 0.773
klu-1 Caenorhabditis elegans WBGene00013970 D 0.761
L596_g19227 Steinernema carpocapsae L596_g19227 I 0.803
L798_04121 Zootermopsis nevadensis L798_04121 I 0.776
L892_g30369 Steinernema scapterisci L892_g30369 I 0.803
L898_g5287 Steinernema monticolum L898_g5287 I 0.803
LCUP004097 Lucilia cuprina LCUP004097 I 0.773
LDEC006538 Leptinotarsa decemlineata LDEC006538 I 0.773
LOAG_17546 Loa loa LOAG_17546 I 0.803
MCINX011334 Melitaea cinxia MCINX011334 N 0.760
MDOA010298 Musca domestica MDOA010298 I 0.773
MhA1_Contig3096.frz3.gene1 Meloidogyne hapla MhA1_Contig3096.frz3.gene1 I 0.827
nAv.1.0.1.g02699 Acanthocheilonema viteae nAv.1.0.1.g02699 I 0.803
nDi.2.2.2.g07689 Dirofilaria immitis nDi.2.2.2.g07689 I 0.803
nLs.2.1.2.g02913 Litomosoides sigmodontis nLs.2.1.2.g02913 I 0.803
NV17203 Nasonia vitripennis NV17203 I 0.768
PHUM540640 Pediculus humanus PHUM540640 I 0.773
PPA26808 Pristionchus pacificus PPA26808 I 0.776
PPAI001591 Phlebotomus papatasi PPAI001591 I 0.773
PTRK_0000952000 Parastrongyloides trichosuri PTRK_0000952000 I 0.766
PTRK_0001586500 Parastrongyloides trichosuri PTRK_0001586500 I 0.766
RPRC001140 Rhodnius prolixus RPRC001140 I 0.773
scaffold108-EXSNAP2012.21 Pristionchus exspectatus scaffold108-EXSNAP2012.21 I 0.776
SINV25082 Solenopsis invicta SINV25082 I 0.768
SMAR002322 Strigamia maritima SMAR002322 I 0.773
SPAL_0000289400 Strongyloides papillosus SPAL_0000289400 I 0.766
SVE_1611300 Strongyloides venezuelensis SVE_1611300 I 0.766
TC002783 Tribolium castaneum TC002783 I 0.773
WBGene00248644 Onchocerca volvulus WBGene00248644 I 0.803
YQE_09824 Dendroctonus ponderosae YQE_09824 I 0.773