GM21001 (Drosophila sechellia)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 FBgn0175882 T218057_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 1.000
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 1.000
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 1.000
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 1.000
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 0.947
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 0.947
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 0.947
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 0.947
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.930
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.930
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.930
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.930
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.930
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.930
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0202478 Homeodomain 157 213

Links

Other Homeodomain family TFs
Other Drosophila sechellia TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000239001 Angiostrongylus cantonensis ACAC_0000239001 I
ACAC_0001180201 Angiostrongylus cantonensis ACAC_0001180201 I
ACOC_0000732601 Angiostrongylus costaricensis ACOC_0000732601 I
ACOC_0001326501 Angiostrongylus costaricensis ACOC_0001326501 I
ANCCAN_12539 Ancylostoma caninum ANCCAN_12539 I
ANCCAN_18459 Ancylostoma caninum ANCCAN_18459 I
ANCCEY_03357 Ancylostoma ceylanicum ANCCEY_03357 I
ASIM_0001309901 Anisakis simplex ASIM_0001309901 I
ASIM_0001589901 Anisakis simplex ASIM_0001589901 I
ASU_10946 Ascaris suum ASU_10946 I
Bm12053 Brugia malayi Bm12053 I
Bm14724 Brugia malayi Bm14724 I
Bm4894 Brugia malayi Bm4894 I
BTMF_0000273701 Brugia timori BTMF_0000273701 I
BTMF_0001198801 Brugia timori BTMF_0001198801 I
BXY_0011200 Bursaphelenchus xylophilus BXY_0011200 I
BXY_1595900 Bursaphelenchus xylophilus BXY_1595900 I
BXY_1600300 Bursaphelenchus xylophilus BXY_1600300 I
CBG07552 Caenorhabditis briggsae CBG07552 I
CBG19594 Caenorhabditis briggsae CBG19594 I
CBG19604 Caenorhabditis briggsae CBG19604 I
CBN07936 Caenorhabditis brenneri CBN07936 I
CBN19233 Caenorhabditis brenneri CBN19233 I
CBN20828 Caenorhabditis brenneri CBN20828 I
CBN31048 Caenorhabditis brenneri CBN31048 I
CJA04720 Caenorhabditis japonica CJA04720 I
CJA13646 Caenorhabditis japonica CJA13646 I
CRE06661 Caenorhabditis remanei CRE06661 I
CRE06667 Caenorhabditis remanei CRE06667 I
CRE15289 Caenorhabditis remanei CRE15289 I
DICVIV_02348 Dictyocaulus viviparus DICVIV_02348 I
DICVIV_11945 Dictyocaulus viviparus DICVIV_11945 I
DME_0000480501 Dracunculus medinensis DME_0000480501 I
DME_0000742401 Dracunculus medinensis DME_0000742401 I
DME_0000960901 Dracunculus medinensis DME_0000960901 I
EVEC_0000733201 Enterobius vermicularis EVEC_0000733201 N
genemark-nMf.1.1.scaf00140-processed-gene-0.6 Meloidogyne floridensis genemark-nMf.1.1.scaf00140-processed-gene-0.6 I
GPLIN_000268400 Globodera pallida GPLIN_000268400 I
GPUH_0000393501 Gongylonema pulchrum GPUH_0000393501 I
Hba_14163 Heterorhabditis bacteriophora Hba_14163 I
Hba_14958 Heterorhabditis bacteriophora Hba_14958 I
HCOI00769300 Haemonchus contortus HCOI00769300 I
HCOI01268300 Haemonchus contortus HCOI01268300 I
HCOI01406200 Haemonchus contortus HCOI01406200 I
HCOI02077900 Haemonchus contortus HCOI02077900 I
HPBE_0001043101 Heligmosomoides bakeri HPBE_0001043101 I
HPLM_0001680701 Haemonchus placei HPLM_0001680701 I
L596_g20569 Steinernema carpocapsae L596_g20569 I
L596_g25297 Steinernema carpocapsae L596_g25297 I
L596_g25666 Steinernema carpocapsae L596_g25666 I
L596_g27086 Steinernema carpocapsae L596_g27086 I
L596_g27130 Steinernema carpocapsae L596_g27130 I
L889_g29204 Steinernema feltiae L889_g29204 I
L889_g29246 Steinernema feltiae L889_g29246 I
L889_g5777 Steinernema feltiae L889_g5777 I
L889_g8361 Steinernema feltiae L889_g8361 I
L892_g19201 Steinernema scapterisci L892_g19201 I
L892_g650 Steinernema scapterisci L892_g650 I
L893_g29388 Steinernema glaseri L893_g29388 I
L893_g29555 Steinernema glaseri L893_g29555 I
L893_g6878 Steinernema glaseri L893_g6878 I
L898_g10316 Steinernema monticolum L898_g10316 I
L898_g14928 Steinernema monticolum L898_g14928 I
L898_g24498 Steinernema monticolum L898_g24498 I
L898_g4801 Steinernema monticolum L898_g4801 I
LOAG_05485 Loa loa LOAG_05485 I
LOAG_18352 Loa loa LOAG_18352 I
maker-nMf.1.1.scaf07948-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf07948-snap-gene-0.4 I
MhA1_Contig217.frz3.gene7 Meloidogyne hapla MhA1_Contig217.frz3.gene7 I
MhA1_Contig984.frz3.gene20 Meloidogyne hapla MhA1_Contig984.frz3.gene20 I
Minc01725 Meloidogyne incognita Minc01725 I
Minc13525 Meloidogyne incognita Minc13525 I
Minc15420 Meloidogyne incognita Minc15420 I
nAv.1.0.1.g01698 Acanthocheilonema viteae nAv.1.0.1.g01698 I
nAv.1.0.1.g09896 Acanthocheilonema viteae nAv.1.0.1.g09896 I
NBR_0000170601 Nippostrongylus brasiliensis NBR_0000170601 I
NBR_0001432001 Nippostrongylus brasiliensis NBR_0001432001 I
nDi.2.2.2.g02781 Dirofilaria immitis nDi.2.2.2.g02781 I
nDi.2.2.2.g05078 Dirofilaria immitis nDi.2.2.2.g05078 I
NECAME_04545 Necator americanus NECAME_04545 I
NECAME_05125 Necator americanus NECAME_05125 I
NECAME_12696 Necator americanus NECAME_12696 I
nhr-119 Caenorhabditis elegans WBGene00003709 I
nhr-3 Caenorhabditis elegans WBGene00003602 D
nhr-88 Caenorhabditis elegans WBGene00003678 I
nLs.2.1.2.g05858 Litomosoides sigmodontis nLs.2.1.2.g05858 I
nLs.2.1.2.g08709 Litomosoides sigmodontis nLs.2.1.2.g08709 I
nOo.2.0.1.g04046 Onchocerca ochengi nOo.2.0.1.g04046 I
nOo.2.0.1.g05901 Onchocerca ochengi nOo.2.0.1.g05901 I
OESDEN_02652 Oesophagostomum dentatum OESDEN_02652 I
OESDEN_02943 Oesophagostomum dentatum OESDEN_02943 I
OESDEN_17109 Oesophagostomum dentatum OESDEN_17109 I
OFLC_0000776201 Onchocerca flexuosa OFLC_0000776201 I
OFLC_0001511801 Onchocerca flexuosa OFLC_0001511801 I
Ppa-nhr-3 Pristionchus pacificus PPA28597 I
PPA20304 Pristionchus pacificus PPA20304 I
PPA21285 Pristionchus pacificus PPA21285 I
PTRK_0000510500 Parastrongyloides trichosuri PTRK_0000510500 I
PTRK_0000775900 Parastrongyloides trichosuri PTRK_0000775900 I
scaffold395-EXSNAP2012.23 Pristionchus exspectatus scaffold395-EXSNAP2012.23 I
scaffold51-EXSNAP2012.23 Pristionchus exspectatus scaffold51-EXSNAP2012.23 I
SMUV_0000428701 Syphacia muris SMUV_0000428701 I
snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf18837-processed-gene-0.2 I
snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 Meloidogyne floridensis snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 I
SPAL_0000110800 Strongyloides papillosus SPAL_0000110800 I
SPAL_0001157400 Strongyloides papillosus SPAL_0001157400 I
SPAL_0001436300 Strongyloides papillosus SPAL_0001436300 I
SSTP_0000217700 Strongyloides stercoralis SSTP_0000217700 I
SSTP_0000831700 Strongyloides stercoralis SSTP_0000831700 I
SSTP_0001234400 Strongyloides stercoralis SSTP_0001234400 I
SVE_0137800 Strongyloides venezuelensis SVE_0137800 I
SVE_0301400 Strongyloides venezuelensis SVE_0301400 I
SVE_1633700 Strongyloides venezuelensis SVE_1633700 I
SVUK_0001012101 Strongylus vulgaris SVUK_0001012101 I
TCLT_0000079701 Thelazia callipaeda TCLT_0000079701 I
TCLT_0000173501 Thelazia callipaeda TCLT_0000173501 I
TCNE_0001780601 Toxocara canis TCNE_0001780601 I
TELCIR_01879 Teladorsagia circumcincta TELCIR_01879 I
TELCIR_05080 Teladorsagia circumcincta TELCIR_05080 I
TELCIR_07363 Teladorsagia circumcincta TELCIR_07363 I
WBGene00241910 Onchocerca volvulus WBGene00241910 I
WBGene00248075 Onchocerca volvulus WBGene00248075 I
WUBG_08518 Wuchereria bancrofti WUBG_08518 I
WUBG_10752 Wuchereria bancrofti WUBG_10752 I