POPTR_0009s07600 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0009s07600 T222541_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.657 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s07600.1 Homeodomain 19 75

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I 0.691
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.614
Bo9g006450 Brassica oleracea Bo9g006450 I 0.615
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.620
Bra034196 Brassica rapa Bra034196 I 0.615
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.620
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.620
cassava16534.m1 Manihot esculenta cassava16534.m1 I 0.632
Ciclev10014928m.g Citrus clementina Ciclev10014928m.g I 0.611
Cla008712 Citrullus lanatus Cla008712 I 0.614
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.600
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.601
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.601
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.601
Gorai.001G134800 Gossypium raimondii Gorai.001G134800 I 0.646
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I 0.778
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.758
MDP0000207866 Malus domestica MDP0000207866 I 0.611
mgf000172m Mimulus guttatus mgf000172m I 0.620
mgf007720m Mimulus guttatus mgf007720m I 0.634
orange1.1g010311m.g Citrus sinensis orange1.1g010311m.g I 0.611
PDK_20s1551001g001 Phoenix dactylifera PDK_20s1551001g001 I 0.605
PK25011.1 Cannabis sativa PK25011.1 D 0.657
POPTR_0001s28350 Populus trichocarpa POPTR_0001s28350 I 0.853
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.608
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.801
SapurV1A.0106s0340 Salix purpurea SapurV1A.0106s0340 I 0.864
TCM_040945 Theobroma cacao TCM_040945 I 0.809
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I 0.629