Gfo_R004570 (Geospiza fortis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gfo_R004570 T226180_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.808 0.543
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.808 0.543
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.808 0.543
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.808 0.543
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.808 0.543
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.808 0.543
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.808 0.543
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.808 0.543
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.808 0.543
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.722 0.413
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.722 0.413
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.722 0.413
SHOX
M02095_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 PBM
Weirauch et al.(2014)
pTH5805 		0.377 1.000
Shox2
M00439_2.00 		Mus musculus
NTAATDDN
NHHATTAN		 PBM
Berger et al.(2008)
Shox2_2641 		0.377 1.000
SHOX
M03232_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
SHOX_1 		0.377 1.000
SHOX2
M03204_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Jolma et al.(2013)
SHOX2_1 		0.377 1.000
Shox2
M03263_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Shox2_1 		0.377 1.000
SHOX
M05366_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
SHOX_eDBD_HT-SELEX 		0.377 1.000
Shox2
M10772_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SHOX2_05 		0.377 1.000
SHOX
M05367_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_1 		0.377 1.000
SHOX
M05368_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_2 		0.377 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R004570 Homeodomain 26 71

Links

Other Homeodomain family TFs
Other Geospiza fortis TFs

1240 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29848.m004650 Ricinus communis 29848.m004650 I 0.000
Aquca_001_00822 Aquilegia coerulea Aquca_001_00822 I 0.000
BGIOSGA002286 Oryza indica BGIOSGA002286 I 0.000
BGIOSGA006916 Oryza indica BGIOSGA006916 I 0.000
BGIOSGA023213 Oryza indica BGIOSGA023213 I 0.000
Bo2g010330 Brassica oleracea Bo2g010330 I 0.000
Bo9g171430 Brassica oleracea Bo9g171430 I 0.000
Bostr.23997s0021 Boechera stricta Bostr.23997s0021 I 0.000
Bostr.29827s0269 Boechera stricta Bostr.29827s0269 I 0.000
Bra008976 Brassica rapa Bra008976 I 0.000
Bra023317 Brassica rapa Bra023317 I 0.000
BRADI1G36750 Brachypodium distachyon BRADI1G36750 I 0.000
BRADI3G07540 Brachypodium distachyon BRADI3G07540 I 0.000
Cagra.7526s0027 Capsella grandiflora Cagra.7526s0027 I 0.000
Carubv10003520m.g Capsella rubella Carubv10003520m.g I 0.000
cassava8163.valid.m1 Manihot esculenta cassava8163.valid.m1 I 0.000
Ca_21380 Cicer arietinum Ca_21380 I 0.000
Ca_22618 Cicer arietinum Ca_22618 I 0.000
chr6.LjT14A08.90.nd Lotus japonicus chr6.LjT14A08.90.nd I 0.000
Ciclev10009720m.g Citrus clementina Ciclev10009720m.g I 0.000
Cla021273 Citrullus lanatus Cla021273 I 0.000
Cla022656 Citrullus lanatus Cla022656 I 0.000
Cucsa.162360 Cucumis sativus Cucsa.162360 I 0.000
Cucsa.310450 Cucumis sativus Cucsa.310450 I 0.000
Eucgr.B02198 Eucalyptus grandis Eucgr.B02198 I 0.000
Eucgr.C02802 Eucalyptus grandis Eucgr.C02802 I 0.000
EuGene.0200010492 Micromonas sp RCC299 EuGene.0200010492 I 0.000
evm.TU.supercontig_115.9 Carica papaya evm.TU.supercontig_115.9 I 0.000
e_gw1.80.85.1 Physcomitrella patens e_gw1.80.85.1 I 0.000
F775_05429 Aegilops tauschii F775_05429 I 0.000
gene11666-v1.0-hybrid Fragaria vesca gene11666-v1.0-hybrid I 0.000
GLYMA08G41450 Glycine max GLYMA08G41450 I 0.000
GLYMA18G14750 Glycine max GLYMA18G14750 I 0.000
Gorai.004G274100 Gossypium raimondii Gorai.004G274100 I 0.000
GRMZM2G137046 Zea mays GRMZM2G137046 I 0.000
GRMZM2G140355 Zea mays GRMZM2G140355 I 0.000
GSMUA_Achr10G27050_001 Musa acuminata GSMUA_Achr10G27050_001 I 0.000
GSMUA_Achr5G06060_001 Musa acuminata GSMUA_Achr5G06060_001 I 0.000
GSMUA_Achr6G05280_001 Musa acuminata GSMUA_Achr6G05280_001 I 0.000
GSMUA_Achr7G09980_001 Musa acuminata GSMUA_Achr7G09980_001 I 0.000
GSMUA_Achr9G28570_001 Musa acuminata GSMUA_Achr9G28570_001 I 0.000
HY5 Arabidopsis thaliana AT5G11260 D 0.000
HY5 Arabidopsis lyrata scaffold_601144.1 I 0.000
HY5 Vitis vinifera VIT_04s0008g05210 I 0.000
LjB12O06.40.nc Lotus japonicus LjB12O06.40.nc I 0.000
LPERR02G06800 Leersia perrieri LPERR02G06800 I 0.000
LPERR06G16860 Leersia perrieri LPERR06G16860 I 0.000
Lus10002028.g Linum usitatissimum Lus10002028.g I 0.000
Lus10002900.g Linum usitatissimum Lus10002900.g I 0.000
MDP0000264514 Malus domestica MDP0000264514 I 0.000
MDP0000586302 Malus domestica MDP0000586302 I 0.000
mgf012104m Mimulus guttatus mgf012104m I 0.000
mgf014305m Mimulus guttatus mgf014305m I 0.000
MTR_7g057160 Medicago truncatula MTR_7g057160 I 0.000
OB02G17160 Oryza brachyantha OB02G17160 I 0.000
OBART02G07840 Oryza barthii OBART02G07840 I 0.000
OBART06G20230 Oryza barthii OBART06G20230 I 0.000
OBART06G20240 Oryza barthii OBART06G20240 I 0.000
OGLUM02G07920 Oryza glumaepatula OGLUM02G07920 I 0.000
OGLUM06G21280 Oryza glumaepatula OGLUM06G21280 I 0.000
OLONG_013539 Oryza longistaminata OLONG_013539 I 0.000
OLONG_023968 Oryza longistaminata OLONG_023968 I 0.000
OMERI06G20830 Oryza meridionalis OMERI06G20830 I 0.000
ONIVA02G09400 Oryza nivara ONIVA02G09400 I 0.000
OPUNC02G07060 Oryza punctata OPUNC02G07060 I 0.000
OPUNC06G18440 Oryza punctata OPUNC06G18440 I 0.000
orange1.1g030957m.g Citrus sinensis orange1.1g030957m.g I 0.000
ORGLA02G0074000 Oryza glaberrima ORGLA02G0074000 I 0.000
ORUFI03G26360 Oryza rufipogon ORUFI03G26360 I 0.000
OS02G0203000 Oryza sativa OS02G0203000 I 0.000
OS06G0601500 Oryza sativa OS06G0601500 I 0.000
Pavir.Aa02966 Panicum virgatum Pavir.Aa02966 I 0.000
Pavir.Ab00856 Panicum virgatum Pavir.Ab00856 I 0.000
Pavir.Da00549 Panicum virgatum Pavir.Da00549 I 0.000
Pavir.Db01231 Panicum virgatum Pavir.Db01231 I 0.000
PGSC0003DMG401020784 Solanum tuberosum PGSC0003DMG401020784 I 0.000
PK17235.1 Cannabis sativa PK17235.1 I 0.000
Pm007163 Prunus mume Pm007163 I 0.000
POPTR_0006s26800 Populus trichocarpa POPTR_0006s26800 I 0.000
POPTR_0018s01530 Populus trichocarpa POPTR_0018s01530 I 0.000
PRUPE_ppa011967mg Prunus persica PRUPE_ppa011967mg I 0.000
PRUPE_ppa012064mg Prunus persica PRUPE_ppa012064mg I 0.000
Q39895_SOYBN Glycine max Q39895_SOYBN D 0.000
SapurV1A.0043s0530 Salix purpurea SapurV1A.0043s0530 I 0.000
SapurV1A.0073s0400 Salix purpurea SapurV1A.0073s0400 I 0.000
SapurV1A.3812s0010 Salix purpurea SapurV1A.3812s0010 I 0.000
SAR_estExt_Genewise1Plus.C_20674 Micromonas pusilla SAR_estExt_Genewise1Plus.C_20674 I 0.000
Sb04g007060 Sorghum bicolor Sb04g007060 I 0.000
Sb10g023420 Sorghum bicolor Sb10g023420 I 0.000
SELMODRAFT_173274 Selaginella moellendorffii SELMODRAFT_173274 I 0.000
SELMODRAFT_440988 Selaginella moellendorffii SELMODRAFT_440988 I 0.000
SELMODRAFT_451326 Selaginella moellendorffii SELMODRAFT_451326 I 0.000
SELMODRAFT_451330 Selaginella moellendorffii SELMODRAFT_451330 I 0.000
Si018524m.g Setaria italica Si018524m.g I 0.000
Solyc08g061130.2 Solanum lycopersicum Solyc08g061130.2 I 0.000
TCM_038392 Theobroma cacao TCM_038392 I 0.000
Thhalv10004860m.g Eutrema salsugineum Thhalv10004860m.g I 0.000
Thhalv10014851m.g Eutrema salsugineum Thhalv10014851m.g I 0.000
Traes_6AS_AFF47E71C Triticum aestivum Traes_6AS_AFF47E71C I 0.000
Traes_6BS_993CBD840 Triticum aestivum Traes_6BS_993CBD840 I 0.000
Traes_6DS_F8DFD036F Triticum aestivum Traes_6DS_F8DFD036F I 0.000
Traes_7DL_68B814464 Triticum aestivum Traes_7DL_68B814464 I 0.000
TRIUR3_25965 Triticum urartu TRIUR3_25965 I 0.000