Cagra.3598s0013 (Capsella grandiflora)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cagra.3598s0013 T246738_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD23
M06964_2.00 		Arabidopsis thaliana
NGCGNDRAWNNCGCN
NGCGNNWTYHNCGCN		 Dap-seq
OMalley et al.(2016)
LBD23_col_a 		0.919 0.919
LBD23
M06965_2.00 		Arabidopsis thaliana
DGCGDDRRWNNCGCN
NGCGNNWYYHHCGCH		 Dap-seq
OMalley et al.(2016)
LBD23_colamp_a 		0.919 0.919
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3598s0013.1.p LOB 5 103

Links

Other LOB family TFs
Other Capsella grandiflora TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29729.m002292 Ricinus communis 29729.m002292 I
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I
BGIOSGA002846 Oryza indica BGIOSGA002846 I
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I
Cla006713 Citrullus lanatus Cla006713 I
Cucsa.136780 Cucumis sativus Cucsa.136780 I
DREB2A Oryza sativa OS01G0165000 I
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I
F775_05774 Aegilops tauschii F775_05774 I
F775_32062 Aegilops tauschii F775_32062 I
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I
LPERR01G03760 Leersia perrieri LPERR01G03760 I
Lus10012226.g Linum usitatissimum Lus10012226.g I
Lus10023633.g Linum usitatissimum Lus10023633.g I
Lus10034902.g Linum usitatissimum Lus10034902.g I
MDP0000147009 Malus domestica MDP0000147009 I
MDP0000153866 Malus domestica MDP0000153866 I
MDP0000165880 Malus domestica MDP0000165880 I
MDP0000290585 Malus domestica MDP0000290585 I
MDP0000446783 Malus domestica MDP0000446783 I
MDP0000880312 Malus domestica MDP0000880312 I
mgf017629m Mimulus guttatus mgf017629m I
MLOC_66686 Hordeum vulgare MLOC_66686 I
MTR_5g083330 Medicago truncatula MTR_5g083330 I
MTR_5g083340 Medicago truncatula MTR_5g083340 I
OB01G13930 Oryza brachyantha OB01G13930 I
OBART01G04210 Oryza barthii OBART01G04210 I
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I
OLONG_014228 Oryza longistaminata OLONG_014228 I
OMERI01G04110 Oryza meridionalis OMERI01G04110 I
ONIVA01G04630 Oryza nivara ONIVA01G04630 I
OPUNC01G03970 Oryza punctata OPUNC01G03970 I
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I
Pavir.J37967 Panicum virgatum Pavir.J37967 I
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I
PK07402.1 Cannabis sativa PK07402.1 D
Pm015262 Prunus mume Pm015262 I
Pm018989 Prunus mume Pm018989 I
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I
PRUPE_ppa022733mg Prunus persica PRUPE_ppa022733mg I
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I
Sb03g004980 Sorghum bicolor Sb03g004980 I
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I
Si002067m.g Setaria italica Si002067m.g I
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I
TRIUR3_17409 Triticum urartu TRIUR3_17409 I
TRIUR3_17973 Triticum urartu TRIUR3_17973 I
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I