POPTR_0001s06330 (Populus trichocarpa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 POPTR_0001s06330 T249654_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s06330.1 MADF 84 161

Links

Other MADF family TFs
Other Populus trichocarpa TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29727.m000472 Ricinus communis 29727.m000472 I 0.947
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.889
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N 0.896
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.856
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.820
Bo6g050870 Brassica oleracea Bo6g050870 I 0.818
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.886
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.820
Bra014370 Brassica rapa Bra014370 I 0.818
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.820
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.813
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.820
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.813
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.942
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.877
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.928
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.877
Cla015773 Citrullus lanatus Cla015773 I 0.844
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.844
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.877
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.887
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.845
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.908
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.877
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.877
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.826
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.855
MDP0000255104 Malus domestica MDP0000255104 I 0.870
MDP0000281471 Malus domestica MDP0000281471 I 0.870
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.855
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.877
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.895
PK22475.1 Cannabis sativa PK22475.1 N 0.934
Pm013209 Prunus mume Pm013209 I 0.883
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.898
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.883
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.882
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.971
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.971
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.895
TCM_029209 Theobroma cacao TCM_029209 I 0.925
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.825
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.951