cassava2218.valid.m1 (Manihot esculenta)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 cassava2218.valid.m1 T250462_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.869 0.613
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.869 0.613
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava2218.valid.m1 MADF 35 117

Links

Other MADF family TFs
Other Manihot esculenta TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29814.m000741 Ricinus communis 29814.m000741 I 0.843
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.836
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.000
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.000
Bo5g136850 Brassica oleracea Bo5g136850 I 0.000
Bo9g177060 Brassica oleracea Bo9g177060 I 0.000
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I 0.000
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.000
Bra007407 Brassica rapa Bra007407 I 0.813
Bra009119 Brassica rapa Bra009119 I 0.000
Bra034866 Brassica rapa Bra034866 I 0.000
Cagra.1504s0056 Capsella grandiflora Cagra.1504s0056 I 0.000
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.000
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.000
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.821
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.000
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.000
GRMZM2G392168 Zea mays GRMZM2G392168 N 0.000
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.000
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.842
MDP0000097759 Malus domestica MDP0000097759 N 0.000
MDP0000943251 Malus domestica MDP0000943251 N 0.000
mgf000047m Mimulus guttatus mgf000047m I 0.908
mgf006505m Mimulus guttatus mgf006505m I 0.893
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.821
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.000
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.000
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.842
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.000
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.842
Sb06g017920 Sorghum bicolor Sb06g017920 N 0.000
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.000
Si010246m.g Setaria italica Si010246m.g N 0.000
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.000
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.000
TCM_042467 Theobroma cacao TCM_042467 N 0.848
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.000
Traes_6AL_7A4395C60 Triticum aestivum Traes_6AL_7A4395C60 N 0.000
Traes_6DL_C27CEED76 Triticum aestivum Traes_6DL_C27CEED76 N 0.000
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.843
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.000