Gorai.009G227500 (Gossypium raimondii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Gorai.009G227500 T258444_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.938 0.938
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.938 0.938
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.854 0.854
Q9ATE8_PETHY
M11011_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP21_01 		0.792 0.792
Q40591_TOBAC
M11002_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_03 		0.792 0.792
SOC1
M08425_2.00 		Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG		 ChIP-chip
Mathelier et al.(2014)
MA0554.1 		0.771 0.771
SOC1
M10915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL20_01 		0.771 0.771
Q9ATE3_PETHY
M11008_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP28_01 		0.771 0.771
M17_MAIZE
M10959_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M17_01 		0.771 0.771
Q9AR49_MAIZE
M10980_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$M29_01 		0.771 0.771
O82699_MALDO
M11022_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS11_01 		0.771 0.771
MADS2
M10966_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_02 		0.771 0.771
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.750 0.750
Q9ATE9_PETHY
M11012_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP20_01 		0.750 0.750
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.750 0.750
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.750 0.750
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.750 0.750
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.750 0.750
Q9ATF1_PETHY
M11013_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP9_01 		0.729 0.729
Q9ST54_MALDO
M11029_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_04 		0.729 0.729
O82697_MALDO
M11020_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_01 		0.729 0.729
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.729 0.729
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.729 0.729
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.729 0.729
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.708 0.708
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.708 0.708
SEP1
M02696_2.00 		Arabidopsis thaliana
NDWNCCAWWWWTRGHAWB
VWTDCYAWWWWTGGNWHN		 SELEX
Mathelier et al.(2014)
MA0584.1 		0.708 0.708
SEP3
M08143_2.00 		Arabidopsis thaliana
CCAAAAAWRGN
NCYWTTTTTGG		 ChIP-seq
Mathelier et al.(2014)
MA0563.1 		0.708 0.708
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.708 0.708
SEP1
M10929_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_01 		0.708 0.708
SEP1
M10930_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL2_02 		0.708 0.708
SEP3
M10902_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL9_01 		0.708 0.708
AGL9_PETHY
M10993_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP2_01 		0.708 0.708
Q9ATE6_PETHY
M11009_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP23_01 		0.708 0.708
Q9ATF3_PETHY
M11015_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP4_01 		0.708 0.708
O82084_MALDO
M11018_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS1_01 		0.708 0.708
Q6UGQ8_PETHY
M11005_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS12_01 		0.708 0.708
Q9LM09_TOBAC
M11016_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS4_01 		0.708 0.708
MADS7
M10975_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS7_02 		0.708 0.708
MADS8
M10976_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_01 		0.708 0.708
Q9SBA6_MALDO
M11028_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS8_02 		0.708 0.708
Q84LI3_WHEAT
M10979_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT1_01 		0.708 0.708
O82128_WHEAT
M10965_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WAP1_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.009G227500.1 MADS box 10 57
Gorai.009G227500.2 MADS box 10 57

Links

Other MADS box family TFs
Other Gossypium raimondii TFs

1105 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29848.m004650 Ricinus communis 29848.m004650 I 0.000
Aquca_001_00822 Aquilegia coerulea Aquca_001_00822 I 0.000
BGIOSGA002286 Oryza indica BGIOSGA002286 I 0.000
BGIOSGA006916 Oryza indica BGIOSGA006916 I 0.000
BGIOSGA023213 Oryza indica BGIOSGA023213 I 0.000
Bo2g010330 Brassica oleracea Bo2g010330 I 0.000
Bo9g171430 Brassica oleracea Bo9g171430 I 0.000
Bostr.23997s0021 Boechera stricta Bostr.23997s0021 I 0.000
Bostr.29827s0269 Boechera stricta Bostr.29827s0269 I 0.000
Bra008976 Brassica rapa Bra008976 I 0.000
Bra023317 Brassica rapa Bra023317 I 0.000
BRADI1G36750 Brachypodium distachyon BRADI1G36750 I 0.000
BRADI3G07540 Brachypodium distachyon BRADI3G07540 I 0.000
Cagra.7526s0027 Capsella grandiflora Cagra.7526s0027 I 0.000
Carubv10003520m.g Capsella rubella Carubv10003520m.g I 0.000
cassava8163.valid.m1 Manihot esculenta cassava8163.valid.m1 I 0.000
Ca_22618 Cicer arietinum Ca_22618 I 0.000
chr6.LjT14A08.90.nd Lotus japonicus chr6.LjT14A08.90.nd I 0.000
Ciclev10009720m.g Citrus clementina Ciclev10009720m.g I 0.000
Cla021273 Citrullus lanatus Cla021273 I 0.000
Cla022656 Citrullus lanatus Cla022656 I 0.000
Cucsa.162360 Cucumis sativus Cucsa.162360 I 0.000
Cucsa.310450 Cucumis sativus Cucsa.310450 I 0.000
Eucgr.B02198 Eucalyptus grandis Eucgr.B02198 I 0.000
Eucgr.C02802 Eucalyptus grandis Eucgr.C02802 I 0.000
EuGene.0200010492 Micromonas sp RCC299 EuGene.0200010492 I 0.000
evm.TU.supercontig_115.9 Carica papaya evm.TU.supercontig_115.9 I 0.000
e_gw1.80.85.1 Physcomitrella patens e_gw1.80.85.1 I 0.000
F775_05429 Aegilops tauschii F775_05429 I 0.000
gene11666-v1.0-hybrid Fragaria vesca gene11666-v1.0-hybrid I 0.000
GLYMA08G41450 Glycine max GLYMA08G41450 I 0.000
GLYMA18G14750 Glycine max GLYMA18G14750 I 0.000
Gorai.004G274100 Gossypium raimondii Gorai.004G274100 I 0.000
GRMZM2G137046 Zea mays GRMZM2G137046 I 0.000
GRMZM2G140355 Zea mays GRMZM2G140355 I 0.000
GSMUA_Achr10G27050_001 Musa acuminata GSMUA_Achr10G27050_001 I 0.000
GSMUA_Achr5G06060_001 Musa acuminata GSMUA_Achr5G06060_001 I 0.000
GSMUA_Achr6G05280_001 Musa acuminata GSMUA_Achr6G05280_001 I 0.000
GSMUA_Achr7G09980_001 Musa acuminata GSMUA_Achr7G09980_001 I 0.000
GSMUA_Achr9G28570_001 Musa acuminata GSMUA_Achr9G28570_001 I 0.000
HY5 Arabidopsis thaliana AT5G11260 D 0.000
HY5 Arabidopsis lyrata scaffold_601144.1 I 0.000
HY5 Vitis vinifera VIT_04s0008g05210 I 0.000
LjB12O06.40.nc Lotus japonicus LjB12O06.40.nc I 0.000
LPERR02G06800 Leersia perrieri LPERR02G06800 I 0.000
LPERR06G16860 Leersia perrieri LPERR06G16860 I 0.000
Lus10002028.g Linum usitatissimum Lus10002028.g I 0.000
Lus10002900.g Linum usitatissimum Lus10002900.g I 0.000
MDP0000264514 Malus domestica MDP0000264514 I 0.000
MDP0000586302 Malus domestica MDP0000586302 I 0.000
mgf012104m Mimulus guttatus mgf012104m I 0.000
mgf014305m Mimulus guttatus mgf014305m I 0.000
MTR_3g436010 Medicago truncatula MTR_3g436010 I 0.000
MTR_7g057160 Medicago truncatula MTR_7g057160 I 0.000
OB02G17160 Oryza brachyantha OB02G17160 I 0.000
OBART02G07840 Oryza barthii OBART02G07840 I 0.000
OBART06G20230 Oryza barthii OBART06G20230 I 0.000
OBART06G20240 Oryza barthii OBART06G20240 I 0.000
OGLUM02G07920 Oryza glumaepatula OGLUM02G07920 I 0.000
OGLUM06G21280 Oryza glumaepatula OGLUM06G21280 I 0.000
OLONG_013539 Oryza longistaminata OLONG_013539 I 0.000
OLONG_023968 Oryza longistaminata OLONG_023968 I 0.000
OMERI06G20830 Oryza meridionalis OMERI06G20830 I 0.000
ONIVA02G09400 Oryza nivara ONIVA02G09400 I 0.000
OPUNC02G07060 Oryza punctata OPUNC02G07060 I 0.000
OPUNC06G18440 Oryza punctata OPUNC06G18440 I 0.000
orange1.1g030957m.g Citrus sinensis orange1.1g030957m.g I 0.000
ORGLA02G0074000 Oryza glaberrima ORGLA02G0074000 I 0.000
ORUFI03G26360 Oryza rufipogon ORUFI03G26360 I 0.000
OS02G0203000 Oryza sativa OS02G0203000 I 0.000
OS06G0601500 Oryza sativa OS06G0601500 I 0.000
Pavir.Aa02966 Panicum virgatum Pavir.Aa02966 I 0.000
Pavir.Ab00856 Panicum virgatum Pavir.Ab00856 I 0.000
Pavir.Da00549 Panicum virgatum Pavir.Da00549 I 0.000
Pavir.Db01231 Panicum virgatum Pavir.Db01231 I 0.000
PGSC0003DMG401020784 Solanum tuberosum PGSC0003DMG401020784 I 0.000
PK17235.1 Cannabis sativa PK17235.1 I 0.000
Pm007163 Prunus mume Pm007163 I 0.000
POPTR_0006s26800 Populus trichocarpa POPTR_0006s26800 I 0.000
POPTR_0018s01530 Populus trichocarpa POPTR_0018s01530 I 0.000
PRUPE_ppa011967mg Prunus persica PRUPE_ppa011967mg I 0.000
PRUPE_ppa012064mg Prunus persica PRUPE_ppa012064mg I 0.000
Q39895_SOYBN Glycine max Q39895_SOYBN D 0.000
SapurV1A.0043s0530 Salix purpurea SapurV1A.0043s0530 I 0.000
SapurV1A.0073s0400 Salix purpurea SapurV1A.0073s0400 I 0.000
SapurV1A.3812s0010 Salix purpurea SapurV1A.3812s0010 I 0.000
SAR_estExt_Genewise1Plus.C_20674 Micromonas pusilla SAR_estExt_Genewise1Plus.C_20674 I 0.000
Sb04g007060 Sorghum bicolor Sb04g007060 I 0.000
Sb10g023420 Sorghum bicolor Sb10g023420 I 0.000
SELMODRAFT_173274 Selaginella moellendorffii SELMODRAFT_173274 I 0.000
SELMODRAFT_440988 Selaginella moellendorffii SELMODRAFT_440988 I 0.000
SELMODRAFT_451326 Selaginella moellendorffii SELMODRAFT_451326 I 0.000
SELMODRAFT_451330 Selaginella moellendorffii SELMODRAFT_451330 I 0.000
Si018524m.g Setaria italica Si018524m.g I 0.000
Solyc08g061130.2 Solanum lycopersicum Solyc08g061130.2 I 0.000
TCM_038392 Theobroma cacao TCM_038392 I 0.000
Thhalv10004860m.g Eutrema salsugineum Thhalv10004860m.g I 0.000
Thhalv10014851m.g Eutrema salsugineum Thhalv10014851m.g I 0.000
Traes_6AS_AFF47E71C Triticum aestivum Traes_6AS_AFF47E71C I 0.000
Traes_6BS_993CBD840 Triticum aestivum Traes_6BS_993CBD840 I 0.000
Traes_6DS_F8DFD036F Triticum aestivum Traes_6DS_F8DFD036F I 0.000
Traes_7DL_68B814464 Triticum aestivum Traes_7DL_68B814464 I 0.000
TRIUR3_25965 Triticum urartu TRIUR3_25965 I 0.000