Thhalv10002346m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10002346m.g T259095_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.745 0.745
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10002346m MADS box 10 57

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.729
Bo2g104810 Brassica oleracea Bo2g104810 I 0.723
Bo9g078450 Brassica oleracea Bo9g078450 I 0.745
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.729
Bra018490 Brassica rapa Bra018490 I 0.745
Bra029469 Brassica rapa Bra029469 I 0.745
Bra041022 Brassica rapa Bra041022 I 0.711
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.750
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.750
evm.TU.contig_25049.5 Carica papaya evm.TU.contig_25049.5 I 0.723
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.723
evm.TU.supercontig_1750.2 Carica papaya evm.TU.supercontig_1750.2 I 0.702
evm.TU.supercontig_265.1 Carica papaya evm.TU.supercontig_265.1 I 0.702
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.702
TCM_026842 Theobroma cacao TCM_026842 I 0.702
Thhalv10002349m.g Eutrema salsugineum Thhalv10002349m.g I 0.957
Thhalv10002350m.g Eutrema salsugineum Thhalv10002350m.g I 0.957
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.932
Thhalv10002353m.g Eutrema salsugineum Thhalv10002353m.g I 0.909
Thhalv10002789m.g Eutrema salsugineum Thhalv10002789m.g I 0.826
Thhalv10002956m.g Eutrema salsugineum Thhalv10002956m.g I 0.787
Thhalv10002996m.g Eutrema salsugineum Thhalv10002996m.g I 0.787
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.702
Thhalv10019449m.g Eutrema salsugineum Thhalv10019449m.g I 0.957
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 1.000
Thhalv10019481m.g Eutrema salsugineum Thhalv10019481m.g I 0.708
Thhalv10019516m.g Eutrema salsugineum Thhalv10019516m.g I 0.979
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 1.000
Thhalv10019667m.g Eutrema salsugineum Thhalv10019667m.g N 0.745
Thhalv10019681m.g Eutrema salsugineum Thhalv10019681m.g I 0.915
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.830
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 1.000
Thhalv10019758m.g Eutrema salsugineum Thhalv10019758m.g N 0.915
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.957
Thhalv10019833m.g Eutrema salsugineum Thhalv10019833m.g I 0.957
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.787
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.787
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.787
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.787