AT3G16350 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT3G16350 T266445_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G16350
M01078_2.00		 Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Sullivan et al.(2014)
pTH7149		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK29550.1
M02358_2.00 		Cannabis sativa
NNHDATCYNN
NNRGATHDNN		 PBM
Weirauch et al.(2014)
pTH9595 		0.899 0.957
fgenesh1_pg.scaffold_70000111
M02342_2.00 		Physcomitrella patens
NNHNATCBN
NVGATNDNN		 PBM
Weirauch et al.(2014)
pTH8492 		0.888 0.936
PK23829.1
M02355_2.00 		Cannabis sativa
VTTATCCD
HGGATAAB		 PBM
Weirauch et al.(2014)
pTH9592 		0.881 0.915
PK17526.1
M02353_2.00 		Cannabis sativa
NNTTATCCAN
NTGGATAANN		 PBM
Weirauch et al.(2014)
pTH9588 		0.870 0.872
PK00738.1
M02346_2.00 		Cannabis sativa
NYWATCYDNN
NNHRGATWRN		 PBM
Weirauch et al.(2014)
pTH9487 		0.850 0.936
KUA1
M02312_2.00 		Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN		 PBM
Weirauch et al.(2014)
pTH7647 		0.849 0.915
KUA1
M07136_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a 		0.849 0.915
KUA1
M07137_2.00 		Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD		 Dap-seq
OMalley et al.(2016)
At5g47390_col_b 		0.849 0.915
AT1G19000
M02287_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Weirauch et al.(2014)
pTH7120 		0.819 0.851
AT1G19000
M07012_2.00 		Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD		 Dap-seq
OMalley et al.(2016)
At1g19000_col_a 		0.819 0.851
AT1G19000
M07013_2.00 		Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW		 Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a 		0.819 0.851
AT5G61620
M07149_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWWN
NWWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
AT5G61620_col_a 		0.803 0.809
AT5G61620
M07150_2.00 		Arabidopsis thaliana
YHTTATCCAHW
WDTGGATAADR		 Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a 		0.803 0.809
AT5G56840
M07144_2.00 		Arabidopsis thaliana
WWYMTTATCCAWWWN
NWWWTGGATAAKRWW		 Dap-seq
OMalley et al.(2016)
AT5G56840_col_a 		0.778 0.830
AT5G56840
M07145_2.00 		Arabidopsis thaliana
HHHWWYHTTATCCWHW
WDWGGATAADRWWDDD		 Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a 		0.778 0.830
0600010132
M02360_2.00 		Ostreococcus tauri
NNVTTATCCDNNN
NNNHGGATAABNN		 PBM
Weirauch et al.(2014)
pTH9441 		0.772 0.851
AT3G10580
M07072_2.00 		Arabidopsis thaliana
AWBCTTATCYWHWHH
DDWDWRGATAAGVWT		 Dap-seq
OMalley et al.(2016)
AT3G10580_col_a 		0.769 0.723
AT3G10580
M07073_2.00 		Arabidopsis thaliana
CCGAWAAWNTCGGDD
HHCCGANWTTWTCGG		 Dap-seq
OMalley et al.(2016)
AT3G10580_colamp_a 		0.769 0.723
AT1G74840
M02291_2.00 		Arabidopsis thaliana
NGWTATCCRNN
NNYGGATAWCN		 PBM
Weirauch et al.(2014)
pTH7074 		0.750 0.830
AT1G74840
M07037_2.00 		Arabidopsis thaliana
HHTTATCCAHW
WDTGGATAADD		 Dap-seq
OMalley et al.(2016)
At1g74840_col100_a 		0.750 0.830
AT1G74840
M07038_2.00 		Arabidopsis thaliana
HWNHTTATCCAHWW
WWDTGGATAADNWD		 Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a 		0.750 0.830
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01078_2.00 Myb 51 98

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G16350.1 Myb 136 183

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

597 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL64 Arabidopsis thaliana AT1G29962 N
AGL85 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002660 N
Bostr.15697s0292 Boechera stricta Bostr.15697s0292 N
Cagra.12398s0004 Capsella grandiflora Cagra.12398s0004 N
Cagra.18025s0001 Capsella grandiflora Cagra.18025s0001 N
Cagra.5647s0017 Capsella grandiflora Cagra.5647s0017 N
Carubv10002683m.g Capsella rubella Carubv10002683m.g N
Carubv10002787m.g Capsella rubella Carubv10002787m.g N
Carubv10010430m.g Capsella rubella Carubv10010430m.g N
Carubv10010438m.g Capsella rubella Carubv10010438m.g N
Carubv10010833m.g Capsella rubella Carubv10010833m.g N
Carubv10011216m.g Capsella rubella Carubv10011216m.g N
Carubv10012214m.g Capsella rubella Carubv10012214m.g N
Carubv10012479m.g Capsella rubella Carubv10012479m.g N
Carubv10021267m.g Capsella rubella Carubv10021267m.g N
Carubv10021362m.g Capsella rubella Carubv10021362m.g N
Carubv10021425m.g Capsella rubella Carubv10021425m.g N
Carubv10021446m.g Capsella rubella Carubv10021446m.g N
Carubv10021725m.g Capsella rubella Carubv10021725m.g N
Carubv10021838m.g Capsella rubella Carubv10021838m.g N
Carubv10022052m.g Capsella rubella Carubv10022052m.g N
Carubv10022123m.g Capsella rubella Carubv10022123m.g N
Carubv10022431m.g Capsella rubella Carubv10022431m.g N