Bo4g025810 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo4g025810 T267304_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.744 0.785
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.697 0.699
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.697 0.699
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.697 0.699
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.685 0.699
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.685 0.699
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.685 0.699
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.680 0.688
MYB1
M07068_2.00 		Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD		 Dap-seq
OMalley et al.(2016)
MYB1_col_a 		0.672 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g025810.1 Myb 50 96
Bo4g025810.1 Myb 102 147

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27798.m000612 Ricinus communis 27798.m000612 I 0.731
29814.m000736 Ricinus communis 29814.m000736 I 0.723
29970.m000987 Ricinus communis 29970.m000987 I 0.685
30170.m013698 Ricinus communis 30170.m013698 I 0.674
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I 0.685
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I 0.708
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I 0.685
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I 0.764
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I 0.696
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I 0.699
AtMYB70 Arabidopsis thaliana AT2G23290 D 0.685
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I 0.685
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.697
BGIOSGA000485 Oryza indica BGIOSGA000485 I 0.733
Bo1g004900 Brassica oleracea Bo1g004900 I 0.680
Bo1g144680 Brassica oleracea Bo1g144680 I 0.701
Bo2g167960 Brassica oleracea Bo2g167960 I 0.697
Bo3g062160 Brassica oleracea Bo3g062160 I 0.687
Bo3g153550 Brassica oleracea Bo3g153550 I 0.680
Bo4g151410 Brassica oleracea Bo4g151410 I 0.666
Bo7g063830 Brassica oleracea Bo7g063830 I 0.697
Bo7g117880 Brassica oleracea Bo7g117880 I 0.683
Bo7g118450 Brassica oleracea Bo7g118450 I 0.662
Bo8g090160 Brassica oleracea Bo8g090160 I 0.805
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.697
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I 0.805
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I 0.734
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I 0.813
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I 0.685
Bostr.7867s1585 Boechera stricta Bostr.7867s1585 I 0.680
Bra001323 Brassica rapa Bra001323 I 0.731
Bra005006 Brassica rapa Bra005006 I 0.904
Bra007186 Brassica rapa Bra007186 I 0.814
Bra010593 Brassica rapa Bra010593 I 0.680
Bra011749 Brassica rapa Bra011749 I 0.680
Bra012149 Brassica rapa Bra012149 I 0.697
Bra032176 Brassica rapa Bra032176 I 0.666
Bra034057 Brassica rapa Bra034057 I 0.713
BRADI2G55040 Brachypodium distachyon BRADI2G55040 I 0.710
Cagra.0003s0013 Capsella grandiflora Cagra.0003s0013 I 0.741
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.697
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I 0.809
Cagra.1232s0025 Capsella grandiflora Cagra.1232s0025 I 0.680
Carubv10007638m.g Capsella rubella Carubv10007638m.g I 0.680
Carubv10017397m.g Capsella rubella Carubv10017397m.g I 0.741
Carubv10023414m.g Capsella rubella Carubv10023414m.g I 0.809
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.685
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.697
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.748
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I 0.685
cassava41257.m1 Manihot esculenta cassava41257.m1 I 0.693
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I 0.685
cassava47374.m1 Manihot esculenta cassava47374.m1 I 0.671
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I 0.697
Ca_02182 Cicer arietinum Ca_02182 I 0.685
Ca_12468 Cicer arietinum Ca_12468 I 0.688
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I 0.709
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I 0.685
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I 0.695
Ciclev10001979m.g Citrus clementina Ciclev10001979m.g I 0.671
Ciclev10012003m.g Citrus clementina Ciclev10012003m.g I 0.753
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I 0.685
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I 0.745
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I 0.714
Cla004431 Citrullus lanatus Cla004431 I 0.730
Cla006872 Citrullus lanatus Cla006872 I 0.675
Cla014191 Citrullus lanatus Cla014191 I 0.683
Cla018417 Citrullus lanatus Cla018417 I 0.731
Cla020946 Citrullus lanatus Cla020946 I 0.671
Cla021015 Citrullus lanatus Cla021015 I 0.680
Cla022947 Citrullus lanatus Cla022947 I 0.671
Cucsa.066910 Cucumis sativus Cucsa.066910 I 0.731
Cucsa.073130 Cucumis sativus Cucsa.073130 I 0.675
Cucsa.102710 Cucumis sativus Cucsa.102710 I 0.683
Cucsa.352560 Cucumis sativus Cucsa.352560 I 0.671
Cucsa.368410 Cucumis sativus Cucsa.368410 I 0.745
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.671
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I 0.661
Eucgr.F00031 Eucalyptus grandis Eucgr.F00031 I 0.675
Eucgr.F02372 Eucalyptus grandis Eucgr.F02372 I 0.714
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.685
Eucgr.J00189 Eucalyptus grandis Eucgr.J00189 I 0.684
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I 0.742
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I 0.746
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.769
evm.TU.supercontig_21.145 Carica papaya evm.TU.supercontig_21.145 I 0.671
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I 0.720
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I 0.685
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I 0.710
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I 0.710
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.725
gene00185-v1.0-hybrid Fragaria vesca gene00185-v1.0-hybrid I 0.666
gene09039-v1.0-hybrid Fragaria vesca gene09039-v1.0-hybrid I 0.684
gene18756-v1.0-hybrid Fragaria vesca gene18756-v1.0-hybrid I 0.673
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I 0.662
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I 0.693
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I 0.685
GLYMA01G26650 Glycine max GLYMA01G26650 I 0.701
GLYMA01G39740 Glycine max GLYMA01G39740 I 0.685
GLYMA03G15810 Glycine max GLYMA03G15810 I 0.692
GLYMA04G04490 Glycine max GLYMA04G04490 I 0.673
GLYMA11G05550 Glycine max GLYMA11G05550 I 0.685
GLYMA14G06870 Glycine max GLYMA14G06870 I 0.669
GLYMA14G09540 Glycine max GLYMA14G09540 I 0.661
Gorai.005G234900 Gossypium raimondii Gorai.005G234900 I 0.665
Gorai.006G179700 Gossypium raimondii Gorai.006G179700 I 0.731
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I 0.685
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I 0.685
Gorai.009G215900 Gossypium raimondii Gorai.009G215900 I 0.663
Gorai.010G016800 Gossypium raimondii Gorai.010G016800 I 0.670
Gorai.010G023500 Gossypium raimondii Gorai.010G023500 I 0.678
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I 0.749
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I 0.714
GRMZM2G169316 Zea mays GRMZM2G169316 I 0.742
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.666
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I 0.661
GSMUA_Achr3G28230_001 Musa acuminata GSMUA_Achr3G28230_001 I 0.678
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.688
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I 0.661
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I 0.675
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I 0.701
GSMUA_Achr9G03720_001 Musa acuminata GSMUA_Achr9G03720_001 I 0.670
GSMUA_Achr9G22600_001 Musa acuminata GSMUA_Achr9G22600_001 I 0.682
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.680
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I 0.694
LPERR01G32110 Leersia perrieri LPERR01G32110 I 0.772
Lus10007503.g Linum usitatissimum Lus10007503.g I 0.679
Lus10010260.g Linum usitatissimum Lus10010260.g I 0.685
Lus10021762.g Linum usitatissimum Lus10021762.g I 0.692
Lus10028250.g Linum usitatissimum Lus10028250.g I 0.761
Lus10028979.g Linum usitatissimum Lus10028979.g I 0.713
Lus10030336.g Linum usitatissimum Lus10030336.g I 0.685
Lus10032764.g Linum usitatissimum Lus10032764.g I 0.684
Lus10040239.g Linum usitatissimum Lus10040239.g I 0.761
Lus10040940.g Linum usitatissimum Lus10040940.g I 0.716
MDP0000196986 Malus domestica MDP0000196986 I 0.685
MDP0000203733 Malus domestica MDP0000203733 I 0.726
MDP0000232454 Malus domestica MDP0000232454 I 0.685
MDP0000275800 Malus domestica MDP0000275800 I 0.675
MDP0000284922 Malus domestica MDP0000284922 I 0.695
MDP0000298689 Malus domestica MDP0000298689 I 0.675
MDP0000319124 Malus domestica MDP0000319124 I 0.726
MDP0000463846 Malus domestica MDP0000463846 I 0.671
MDP0000478512 Malus domestica MDP0000478512 I 0.681
MDP0000807341 Malus domestica MDP0000807341 I 0.672
MDP0000894463 Malus domestica MDP0000894463 I 0.684
mgf002573m Mimulus guttatus mgf002573m I 0.672
mgf014089m Mimulus guttatus mgf014089m I 0.676
mgf015566m Mimulus guttatus mgf015566m I 0.735
mgf018580m Mimulus guttatus mgf018580m I 0.678
mgf020432m Mimulus guttatus mgf020432m I 0.740
mgf023922m Mimulus guttatus mgf023922m I 0.682
MLOC_10322 Hordeum vulgare MLOC_10322 I 0.668
MTR_4g019370 Medicago truncatula MTR_4g019370 I 0.671
MTR_4g094982 Medicago truncatula MTR_4g094982 I 0.671
MTR_5g016510 Medicago truncatula MTR_5g016510 I 0.685
MYB1 Arabidopsis thaliana AT3G09230 D 0.672
MYB109 Arabidopsis thaliana AT3G55730 I 0.824
MYB109 Arabidopsis lyrata fgenesh2_kg.5__1999__AT3G55730.1 I 0.771
MYB25 Arabidopsis lyrata Al_scaffold_0004_2572 I 0.795
MYB25 Arabidopsis thaliana AT2G39880 I 0.770
MYB44 Arabidopsis thaliana AT5G67300 D 0.697
MYB73 Arabidopsis thaliana AT4G37260 D 0.680
OB01G46120 Oryza brachyantha OB01G46120 I 0.763
OBART01G37390 Oryza barthii OBART01G37390 I 0.733
OGLUM01G41330 Oryza glumaepatula OGLUM01G41330 I 0.733
OLONG_001357 Oryza longistaminata OLONG_001357 I 0.733
OMERI01G34370 Oryza meridionalis OMERI01G34370 I 0.730
ONIVA01G42300 Oryza nivara ONIVA01G42300 I 0.733
OPUNC01G36300 Oryza punctata OPUNC01G36300 I 0.733
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I 0.745
orange1.1g017566m.g Citrus sinensis orange1.1g017566m.g I 0.753
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I 0.685
orange1.1g022144m.g Citrus sinensis orange1.1g022144m.g I 0.671
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I 0.714
ORGLA01G0312200 Oryza glaberrima ORGLA01G0312200 I 0.733
ORUFI01G40770 Oryza rufipogon ORUFI01G40770 I 0.733
OS01G0850400 Oryza sativa OS01G0850400 I 0.733
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I 0.742
Pavir.J13677 Panicum virgatum Pavir.J13677 I 0.742
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I 0.687
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I 0.691
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I 0.685
PGSC0003DMG400027190 Solanum tuberosum PGSC0003DMG400027190 I 0.725
PK01153.1 Cannabis sativa PK01153.1 I 0.664
PK07741.1 Cannabis sativa PK07741.1 D 0.744
PK12959.1 Cannabis sativa PK12959.1 I 0.681
PK17282.1 Cannabis sativa PK17282.1 I 0.671
PK28565.1 Cannabis sativa PK28565.1 D 0.685
Pm002576 Prunus mume Pm002576 I 0.701
Pm005220 Prunus mume Pm005220 I 0.684
Pm005332 Prunus mume Pm005332 I 0.671
Pm018862 Prunus mume Pm018862 I 0.717
Pm018951 Prunus mume Pm018951 I 0.678
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I 0.671
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I 0.693
POPTR_0009s09890 Populus trichocarpa POPTR_0009s09890 I 0.686
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I 0.671
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I 0.692
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I 0.685
PRUPE_ppa008979mg Prunus persica PRUPE_ppa008979mg I 0.671
PRUPE_ppa010735mg Prunus persica PRUPE_ppa010735mg I 0.684
PRUPE_ppa017892mg Prunus persica PRUPE_ppa017892mg I 0.678
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I 0.680
SapurV1A.0262s0270 Salix purpurea SapurV1A.0262s0270 I 0.706
SapurV1A.0339s0020 Salix purpurea SapurV1A.0339s0020 I 0.680
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I 0.701
SapurV1A.0650s0070 Salix purpurea SapurV1A.0650s0070 I 0.673
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I 0.686
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I 0.708
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I 0.671
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I 0.671
Sb03g039950 Sorghum bicolor Sb03g039950 I 0.732
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I 0.674
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I 0.668
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I 0.668
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I 0.674
Si001686m.g Setaria italica Si001686m.g I 0.699
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I 0.685
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I 0.687
Solyc05g052850.2 Solanum lycopersicum Solyc05g052850.2 I 0.759
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I 0.691
TCM_000696 Theobroma cacao TCM_000696 I 0.685
TCM_021796 Theobroma cacao TCM_021796 I 0.722
TCM_042474 Theobroma cacao TCM_042474 I 0.674
TCM_042629 Theobroma cacao TCM_042629 I 0.749
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I 0.685
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.697
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I 0.805
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I 0.888
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I 0.699
Thhalv10025742m.g Eutrema salsugineum Thhalv10025742m.g I 0.680
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I 0.692
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I 0.688
VIT_08s0007g01540 Vitis vinifera VIT_08s0007g01540 I 0.681
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I 0.718
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I 0.714
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I 0.685