Bra028593 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra028593 T268020_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.884 0.957
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.884 0.957
AtMYB93
M07020_2.00 		Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD		 Dap-seq
OMalley et al.(2016)
MYB93_col_a 		0.788 0.839
AtMYB93
M07021_2.00 		Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN		 Dap-seq
OMalley et al.(2016)
MYB93_colamp_a 		0.788 0.839
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.766 0.806
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.766 0.806
MYB106
M11040_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G01140_01 		0.760 0.763
AtMYB17
M07099_2.00 		Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB17_colamp_a 		0.707 0.742
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.683 0.699
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.683 0.699
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.683 0.699
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.675 0.763
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.669 0.753
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.669 0.753
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.663 0.774
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.663 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra028593.1-P Myb 14 61
Bra028593.1-P Myb 67 112

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

837 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29848.m004559 Ricinus communis 29848.m004559 I
29983.m003131 Ricinus communis 29983.m003131 I
30054.m000786 Ricinus communis 30054.m000786 I
AMTR_s00058p00133630 Amborella trichopoda AMTR_s00058p00133630 I
APRR2 Arabidopsis thaliana AT4G18020 D
APRR2 Arabidopsis lyrata fgenesh2_kg.7__2503__AT4G18020.2 I
APRR2 Vitis vinifera VIT_02s0012g00570 I
Aquca_044_00072 Aquilegia coerulea Aquca_044_00072 I
Aquca_051_00026 Aquilegia coerulea Aquca_051_00026 I
ARR2 Arabidopsis lyrata scaffold_702902.1 I
BGIOSGA022875 Oryza indica BGIOSGA022875 I
Bo1g019180 Brassica oleracea Bo1g019180 I
Bo1g055180 Brassica oleracea Bo1g055180 I
Bo7g003410 Brassica oleracea Bo7g003410 I
Bo7g067200 Brassica oleracea Bo7g067200 I
Bo7g105690 Brassica oleracea Bo7g105690 I
Bo8g102300 Brassica oleracea Bo8g102300 I
Bostr.0556s0001 Boechera stricta Bostr.0556s0001 I
Bostr.30275s0051 Boechera stricta Bostr.30275s0051 I
Bostr.30275s0270 Boechera stricta Bostr.30275s0270 I
Bostr.7903s0106 Boechera stricta Bostr.7903s0106 I
Bra012623 Brassica rapa Bra012623 I
Bra013277 Brassica rapa Bra013277 I
Bra013278 Brassica rapa Bra013278 I
Bra013279 Brassica rapa Bra013279 I
Bra031129 Brassica rapa Bra031129 I
Bra033527 Brassica rapa Bra033527 I
Bra033726 Brassica rapa Bra033726 I
Bra036015 Brassica rapa Bra036015 I
BRADI1G43710 Brachypodium distachyon BRADI1G43710 I
BRADI2G08287 Brachypodium distachyon BRADI2G08287 I
Cagra.0053s0018 Capsella grandiflora Cagra.0053s0018 I
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I
Cagra.2516s0014 Capsella grandiflora Cagra.2516s0014 I
Carubv10007581m.g Capsella rubella Carubv10007581m.g I
Carubv10014114m.g Capsella rubella Carubv10014114m.g I
Carubv10026528m.g Capsella rubella Carubv10026528m.g I
cassava2466.valid.m1 Manihot esculenta cassava2466.valid.m1 I
cassava43649.valid.m1 Manihot esculenta cassava43649.valid.m1 I
cassava43650.valid.m1 Manihot esculenta cassava43650.valid.m1 I
cassava9823.m1 Manihot esculenta cassava9823.m1 I
Ca_02452 Cicer arietinum Ca_02452 I
Ca_09080 Cicer arietinum Ca_09080 I
Ca_11268 Cicer arietinum Ca_11268 I
chr3.CM0160.680.nd Lotus japonicus chr3.CM0160.680.nd I
Ciclev10007648m.g Citrus clementina Ciclev10007648m.g I
Ciclev10015266m.g Citrus clementina Ciclev10015266m.g I
Ciclev10031120m.g Citrus clementina Ciclev10031120m.g I
Cla003791 Citrullus lanatus Cla003791 I
Cla008926 Citrullus lanatus Cla008926 I
Cucsa.087530 Cucumis sativus Cucsa.087530 I
Cucsa.321580 Cucumis sativus Cucsa.321580 I
Eucgr.A01857 Eucalyptus grandis Eucgr.A01857 I
Eucgr.E00308 Eucalyptus grandis Eucgr.E00308 I
Eucgr.K01056 Eucalyptus grandis Eucgr.K01056 I
evm.TU.supercontig_6.428 Carica papaya evm.TU.supercontig_6.428 I
F775_20285 Aegilops tauschii F775_20285 I
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I
gene10041-v1.0-hybrid Fragaria vesca gene10041-v1.0-hybrid I
gene10484-v1.0-hybrid Fragaria vesca gene10484-v1.0-hybrid I
gene17750-v1.0-hybrid Fragaria vesca gene17750-v1.0-hybrid I
GLK1 Oryza sativa OS06G0348800 I
GLK2 Arabidopsis thaliana AT5G44190 I
GLK2 Oryza sativa OS01G0239000 I
GLYMA06G44330 Glycine max GLYMA06G44330 I
GLYMA12G13430 Glycine max GLYMA12G13430 I
GLYMA12G33430 Glycine max GLYMA12G33430 I
GLYMA13G37010 Glycine max GLYMA13G37010 I
Gorai.002G020300 Gossypium raimondii Gorai.002G020300 I
Gorai.008G155000 Gossypium raimondii Gorai.008G155000 I
Gorai.012G126600 Gossypium raimondii Gorai.012G126600 I
GPRI1 Arabidopsis thaliana AT2G20570 D
GPRI1 Arabidopsis lyrata fgenesh2_kg.3__3588__AT2G20570.1 I
GPRI1 Vitis vinifera VIT_12s0028g03100 I
GRMZM2G087804 Zea mays GRMZM2G087804 I
GSMUA_Achr10G26160_001 Musa acuminata GSMUA_Achr10G26160_001 I
GSMUA_Achr11G08310_001 Musa acuminata GSMUA_Achr11G08310_001 I
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I
GSMUA_Achr7G11040_001 Musa acuminata GSMUA_Achr7G11040_001 I
GSMUA_Achr9G16610_001 Musa acuminata GSMUA_Achr9G16610_001 I
LPERR01G08320 Leersia perrieri LPERR01G08320 I
LPERR06G12880 Leersia perrieri LPERR06G12880 I
Lus10005340.g Linum usitatissimum Lus10005340.g I
Lus10011044.g Linum usitatissimum Lus10011044.g I
Lus10016846.g Linum usitatissimum Lus10016846.g I
Lus10018649.g Linum usitatissimum Lus10018649.g I
Lus10033642.g Linum usitatissimum Lus10033642.g I
Lus10037719.g Linum usitatissimum Lus10037719.g I
Lus10039883.g Linum usitatissimum Lus10039883.g I
Lus10040109.g Linum usitatissimum Lus10040109.g I
Lus10041020.g Linum usitatissimum Lus10041020.g I
MDP0000225179 Malus domestica MDP0000225179 I
MDP0000237396 Malus domestica MDP0000237396 I
MDP0000248863 Malus domestica MDP0000248863 I
MDP0000526864 Malus domestica MDP0000526864 I
mgf004257m Mimulus guttatus mgf004257m I
mgf007181m Mimulus guttatus mgf007181m I
mgf012846m Mimulus guttatus mgf012846m I
mgf014879m Mimulus guttatus mgf014879m I
MLOC_43537 Hordeum vulgare MLOC_43537 I
MTR_1g013170 Medicago truncatula MTR_1g013170 I
MTR_2g090675 Medicago truncatula MTR_2g090675 I
MTR_4g078810 Medicago truncatula MTR_4g078810 I
OB06G22250 Oryza brachyantha OB06G22250 I
OBART03G02540 Oryza barthii OBART03G02540 I
OGLUM01G10130 Oryza glumaepatula OGLUM01G10130 I
OGLUM06G15080 Oryza glumaepatula OGLUM06G15080 I
OMERI01G08840 Oryza meridionalis OMERI01G08840 I
OMERI06G15340 Oryza meridionalis OMERI06G15340 I
ONIVA01G11450 Oryza nivara ONIVA01G11450 I
ONIVA06G16920 Oryza nivara ONIVA06G16920 I
OPUNC01G08680 Oryza punctata OPUNC01G08680 I
OPUNC06G13180 Oryza punctata OPUNC06G13180 I
orange1.1g005719m.g Citrus sinensis orange1.1g005719m.g I
orange1.1g008254m.g Citrus sinensis orange1.1g008254m.g I
orange1.1g013528m.g Citrus sinensis orange1.1g013528m.g I
ORGLA06G0126200 Oryza glaberrima ORGLA06G0126200 I
ORUFI01G09620 Oryza rufipogon ORUFI01G09620 I
ORUFI06G15000 Oryza rufipogon ORUFI06G15000 I
Pavir.Db00757 Panicum virgatum Pavir.Db00757 N
Pavir.Db01285 Panicum virgatum Pavir.Db01285 I
Pavir.Ea00014 Panicum virgatum Pavir.Ea00014 I
Pavir.Eb00063 Panicum virgatum Pavir.Eb00063 I
Pavir.J10177 Panicum virgatum Pavir.J10177 N
PDK_20s1585631g001 Phoenix dactylifera PDK_20s1585631g001 I
PDK_20s1662851g001 Phoenix dactylifera PDK_20s1662851g001 I
PGSC0003DMG400009378 Solanum tuberosum PGSC0003DMG400009378 I
PGSC0003DMG400021857 Solanum tuberosum PGSC0003DMG400021857 I
PK19826.1 Cannabis sativa PK19826.1 I
PK27491.1 Cannabis sativa PK27491.1 I
Pm014123 Prunus mume Pm014123 I
Pm014733 Prunus mume Pm014733 I
POPTR_0001s02910 Populus trichocarpa POPTR_0001s02910 I
POPTR_0007s01230 Populus trichocarpa POPTR_0007s01230 I
POPTR_0017s04720 Populus trichocarpa POPTR_0017s04720 I
PRUPE_ppa004161mg Prunus persica PRUPE_ppa004161mg I
PRUPE_ppa014599mg Prunus persica PRUPE_ppa014599mg I
SapurV1A.0118s0260 Salix purpurea SapurV1A.0118s0260 I
SapurV1A.0132s0010 Salix purpurea SapurV1A.0132s0010 I
SapurV1A.0693s0070 Salix purpurea SapurV1A.0693s0070 I
SapurV1A.1296s0050 Salix purpurea SapurV1A.1296s0050 I
SapurV1A.1950s0030 Salix purpurea SapurV1A.1950s0030 I
Sb03g000400 Sorghum bicolor Sb03g000400 I
Sb10g008400 Sorghum bicolor Sb10g008400 I
SELMODRAFT_428906 Selaginella moellendorffii SELMODRAFT_428906 I
SELMODRAFT_447635 Selaginella moellendorffii SELMODRAFT_447635 I
Si001336m.g Setaria italica Si001336m.g I
Si006400m.g Setaria italica Si006400m.g I
Solyc07g053630.2 Solanum lycopersicum Solyc07g053630.2 I
TCM_008193 Theobroma cacao TCM_008193 I
TCM_015780 Theobroma cacao TCM_015780 I
Thhalv10001986m.g Eutrema salsugineum Thhalv10001986m.g I
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I
Thhalv10024686m.g Eutrema salsugineum Thhalv10024686m.g I
Thhalv10024919m.g Eutrema salsugineum Thhalv10024919m.g I
TRAES3BF062500050CFD_g Triticum aestivum TRAES3BF062500050CFD_g I
Traes_7DL_58DDB90E3 Triticum aestivum Traes_7DL_58DDB90E3 I