gene14869-v1.0-hybrid (Fragaria vesca)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 gene14869-v1.0-hybrid T297946_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC037
M07187_2.00 		Arabidopsis thaliana
CKTVNDNHNYAMG
CKTRNDNHNBAMG		 Dap-seq
OMalley et al.(2016)
VND1_col_a 		0.965 0.947
ANAC076
M07224_2.00 		Arabidopsis thaliana
TRCKTVHNNHNYAMG
CKTRNDNNDBAMGYA		 Dap-seq
OMalley et al.(2016)
VND2_col_a 		0.962 0.965
ANAC076
M07225_2.00 		Arabidopsis thaliana
TTGCKTVHNNHNYAMGYHAHNNN
NNNDTDRCKTRNDNNDBAMGCAA		 Dap-seq
OMalley et al.(2016)
VND2_colamp_a 		0.962 0.965
NAC105
M00980_2.00 		Arabidopsis thaliana
NYWHKNHWNN
NNWDNMDWRN		 PBM
Lindemose et al.(2014)
VND3 		0.931 0.851
NAC105
M07245_2.00 		Arabidopsis thaliana
NTTGCTTVNNNHNYAMG
CKTRNDNNNBAAGCAAN		 Dap-seq
OMalley et al.(2016)
VND3_colamp_a 		0.931 0.851
NAC105
M07246_2.00 		Arabidopsis thaliana
TTGCTTVHNNHNYAMG
CKTRNDNNDBAAGCAA		 Dap-seq
OMalley et al.(2016)
VND3_col 		0.931 0.851
NAC007
M07164_2.00 		Arabidopsis thaliana
TTRCKTVHDNNNYAMG
CKTRNNNHDBAMGYAA		 Dap-seq
OMalley et al.(2016)
VND4_colamp_a 		0.920 0.833
NAC007
M07165_2.00 		Arabidopsis thaliana
TGCKTVHDNHDYAMG
CKTRHDNHDBAMGCA		 Dap-seq
OMalley et al.(2016)
VND4_col 		0.920 0.833
NAC030
M00974_2.00 		Arabidopsis thaliana
NYACGBMWNN
NNWKVCGTRN		 PBM
Lindemose et al.(2014)
VND7 		0.879 0.798
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna14869.1-v1.0-hybrid NAC/NAM 9 136

Links

Other NAC/NAM family TFs
Other Fragaria vesca TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_039_00001 Aquilegia coerulea Aquca_039_00001 N 0.000
Aquca_102_00001 Aquilegia coerulea Aquca_102_00001 N 0.000
Bo6g110620 Brassica oleracea Bo6g110620 N 0.000
Cagra.10840s0006 Capsella grandiflora Cagra.10840s0006 N 0.000
Carubv10022346m.g Capsella rubella Carubv10022346m.g N 0.000
cassava21091.m1 Manihot esculenta cassava21091.m1 N 0.000
cassava35563.valid.m1 Manihot esculenta cassava35563.valid.m1 N 0.000
Cucsa.185330 Cucumis sativus Cucsa.185330 N 0.000
Eucgr.K01194 Eucalyptus grandis Eucgr.K01194 N 0.000
gene24495-v1.0-hybrid Fragaria vesca gene24495-v1.0-hybrid N 0.000
GLYMA08G42321 Glycine max GLYMA08G42321 N 0.000
GLYMA18G12556 Glycine max GLYMA18G12556 N 0.000
Gorai.012G042700 Gossypium raimondii Gorai.012G042700 N 0.000
mgf000829m Mimulus guttatus mgf000829m N 0.000
PGSC0003DMG400021240 Solanum tuberosum PGSC0003DMG400021240 N 0.000
PK13949.1 Cannabis sativa PK13949.1 N 0.000
Pm014562 Prunus mume Pm014562 N 0.000
PRUPE_ppa002590mg Prunus persica PRUPE_ppa002590mg N 0.000
Solyc10g007810.2 Solanum lycopersicum Solyc10g007810.2 N 0.000
TCM_001836 Theobroma cacao TCM_001836 N 0.000
Thhalv10018229m.g Eutrema salsugineum Thhalv10018229m.g N 0.000
VIT_12s0142g00390 Vitis vinifera VIT_12s0142g00390 N 0.000