LCORL (Bos taurus)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSBTAG00000046561 T313519_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LCORL
M01304_2.00 		Homo sapiens
HYNAAWHN
NDWTTNRD		 PBM
Lambert et al.(2019)
pTH11267 		1.000 1.000
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000055987 Pipsqueak 278 315
ENSBTAP00000055987 Pipsqueak 525 570

Links

Other Pipsqueak family TFs
Other Bos taurus TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC234185.1_FG006 Zea mays AC234185.1_FG006 I 0.000
AMTR_s00025p00244880 Amborella trichopoda AMTR_s00025p00244880 N 0.000
Aquca_015_00242 Aquilegia coerulea Aquca_015_00242 N 0.000
Aquca_015_00243 Aquilegia coerulea Aquca_015_00243 N 0.000
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.000
BGIOSGA005284 Oryza indica BGIOSGA005284 N 0.000
BGIOSGA007600 Oryza indica BGIOSGA007600 N 0.000
BGIOSGA030217 Oryza indica BGIOSGA030217 N 0.000
BGIOSGA030219 Oryza indica BGIOSGA030219 N 0.000
BRADI1G20090 Brachypodium distachyon BRADI1G20090 N 0.000
BRADI4G39420 Brachypodium distachyon BRADI4G39420 N 0.000
F775_04223 Aegilops tauschii F775_04223 I 0.000
F775_43210 Aegilops tauschii F775_43210 I 0.000
GRMZM2G459864 Zea mays GRMZM2G459864 N 0.000
GRMZM2G472100 Zea mays GRMZM2G472100 N 0.000
GRMZM5G891280 Zea mays GRMZM5G891280 I 0.000
GSMUA_Achr5G26530_001 Musa acuminata GSMUA_Achr5G26530_001 I 0.000
GSMUA_Achr8G07230_001 Musa acuminata GSMUA_Achr8G07230_001 I 0.000
LPERR01G40130 Leersia perrieri LPERR01G40130 N 0.000
LPERR02G10390 Leersia perrieri LPERR02G10390 N 0.000
OB01G55160 Oryza brachyantha OB01G55160 N 0.000
OB06G21580 Oryza brachyantha OB06G21580 N 0.000
OBART01G45740 Oryza barthii OBART01G45740 N 0.000
OBART02G04930 Oryza barthii OBART02G04930 N 0.000
OBART09G00790 Oryza barthii OBART09G00790 N 0.000
OBART09G00850 Oryza barthii OBART09G00850 N 0.000
OGLUM01G50090 Oryza glumaepatula OGLUM01G50090 N 0.000
OGLUM02G04740 Oryza glumaepatula OGLUM02G04740 N 0.000
OGLUM09G01090 Oryza glumaepatula OGLUM09G01090 N 0.000
OGLUM09G01140 Oryza glumaepatula OGLUM09G01140 N 0.000
OLONG_000580 Oryza longistaminata OLONG_000580 N 0.000
OLONG_018222 Oryza longistaminata OLONG_018222 N 0.000
OLONG_027660 Oryza longistaminata OLONG_027660 N 0.000
OMERI09G00900 Oryza meridionalis OMERI09G00900 N 0.000
ONIVA01G52000 Oryza nivara ONIVA01G52000 N 0.000
ONIVA02G05120 Oryza nivara ONIVA02G05120 N 0.000
ONIVA09G00820 Oryza nivara ONIVA09G00820 N 0.000
ONIVA09G00960 Oryza nivara ONIVA09G00960 N 0.000
OPUNC01G44670 Oryza punctata OPUNC01G44670 N 0.000
OPUNC09G00580 Oryza punctata OPUNC09G00580 N 0.000
OPUNC09G08220 Oryza punctata OPUNC09G08220 N 0.000
ORGLA01G0394900 Oryza glaberrima ORGLA01G0394900 N 0.000
ORGLA02G0045500 Oryza glaberrima ORGLA02G0045500 N 0.000
ORGLA09G0007100 Oryza glaberrima ORGLA09G0007100 N 0.000
ORUFI01G49230 Oryza rufipogon ORUFI01G49230 N 0.000
ORUFI02G05030 Oryza rufipogon ORUFI02G05030 N 0.000
ORUFI09G00820 Oryza rufipogon ORUFI09G00820 N 0.000
ORUFI09G00870 Oryza rufipogon ORUFI09G00870 N 0.000
OS01G0975800 Oryza sativa OS01G0975800 N 0.000
OS09G0116000 Oryza sativa OS09G0116000 N 0.000
OS09G0116800 Oryza sativa OS09G0116800 N 0.000
OS09G0402533 Oryza sativa OS09G0402533 N 0.000
Pavir.Ba03370 Panicum virgatum Pavir.Ba03370 N 0.000
Pavir.Bb00803 Panicum virgatum Pavir.Bb00803 N 0.000
Pavir.Bb00804 Panicum virgatum Pavir.Bb00804 N 0.000
Pavir.Fb00782 Panicum virgatum Pavir.Fb00782 I 0.000
Pavir.J00788 Panicum virgatum Pavir.J00788 I 0.000
Pavir.J11717 Panicum virgatum Pavir.J11717 I 0.000
Sb02g006700 Sorghum bicolor Sb02g006700 N 0.000
Sb07g007306 Sorghum bicolor Sb07g007306 N 0.000
Sb07g007373 Sorghum bicolor Sb07g007373 N 0.000
Sb09g029120 Sorghum bicolor Sb09g029120 I 0.000
Si019951m.g Setaria italica Si019951m.g I 0.000
Si032189m.g Setaria italica Si032189m.g N 0.000
Si038960m.g Setaria italica Si038960m.g N 0.000
TRAES3BF106100060CFD_g Triticum aestivum TRAES3BF106100060CFD_g I 0.000
Traes_6DL_609A01BD5 Triticum aestivum Traes_6DL_609A01BD5 I 0.000
Traes_7BS_4D5DE99CC Triticum aestivum Traes_7BS_4D5DE99CC I 0.000
TRIUR3_30073 Triticum urartu TRIUR3_30073 I 0.000