D918_02290 (Trichuris suis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 D918_02290 T319175_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.655 0.342
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.655 0.342
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.655 0.342
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.655 0.342
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.655 0.342
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D918_02290 RFX 383 461

Links

Other RFX family TFs
Other Trichuris suis TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29216.m000261 Ricinus communis 29216.m000261 I
30152.m002405 Ricinus communis 30152.m002405 I
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I
BGIOSGA008576 Oryza indica BGIOSGA008576 I
BGIOSGA028963 Oryza indica BGIOSGA028963 I
BGIOSGA031008 Oryza indica BGIOSGA031008 I
BHLH122 Arabidopsis thaliana AT1G51140 D
Bo4g015860 Brassica oleracea Bo4g015860 I
Bo4g191390 Brassica oleracea Bo4g191390 I
Bo6g024810 Brassica oleracea Bo6g024810 I
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I
Bra004678 Brassica rapa Bra004678 I
Bra016886 Brassica rapa Bra016886 I
Bra018896 Brassica rapa Bra018896 I
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I
BRADI4G33670 Brachypodium distachyon BRADI4G33670 I
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I
Carubv10009458m.g Capsella rubella Carubv10009458m.g I
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I
Ca_02662 Cicer arietinum Ca_02662 I
Ca_14223 Cicer arietinum Ca_14223 I
Ca_18899 Cicer arietinum Ca_18899 I
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I
Ciclev10031622m.g Citrus clementina Ciclev10031622m.g I
Cla006394 Citrullus lanatus Cla006394 I
Cla017792 Citrullus lanatus Cla017792 I
Cucsa.143260 Cucumis sativus Cucsa.143260 I
Cucsa.242910 Cucumis sativus Cucsa.242910 I
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I
e_gw1.273.42.1 Physcomitrella patens e_gw1.273.42.1 I
F775_24151 Aegilops tauschii F775_24151 I
fgenesh1_pg.scaffold_155000050 Physcomitrella patens fgenesh1_pg.scaffold_155000050 I
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I
gene26967-v1.0-hybrid Fragaria vesca gene26967-v1.0-hybrid I
GLYMA02G29830 Glycine max GLYMA02G29830 I
GLYMA10G12150 Glycine max GLYMA10G12150 I
GLYMA11G13960 Glycine max GLYMA11G13960 I
GLYMA12G05930 Glycine max GLYMA12G05930 I
GLYMA13G41670 Glycine max GLYMA13G41670 I
GLYMA15G03740 Glycine max GLYMA15G03740 I
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I
Gorai.004G035800 Gossypium raimondii Gorai.004G035800 I
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I
GRMZM2G085467 Zea mays GRMZM2G085467 I
GRMZM2G142932 Zea mays GRMZM2G142932 I
GRMZM2G153454 Zea mays GRMZM2G153454 I
GRMZM2G417597 Zea mays GRMZM2G417597 I
GRMZM2G437481 Zea mays GRMZM2G437481 I
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I
GSMUA_Achr6G21220_001 Musa acuminata GSMUA_Achr6G21220_001 I
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I
gw1.185.89.1 Physcomitrella patens gw1.185.89.1 I
LPERR02G18900 Leersia perrieri LPERR02G18900 I
Lus10021023.g Linum usitatissimum Lus10021023.g I
Lus10031255.g Linum usitatissimum Lus10031255.g I
Lus10031826.g Linum usitatissimum Lus10031826.g I
MDP0000180376 Malus domestica MDP0000180376 I
mgf016092m Mimulus guttatus mgf016092m I
mgf016734m Mimulus guttatus mgf016734m I
MLOC_30102 Hordeum vulgare MLOC_30102 I
MLOC_67834 Hordeum vulgare MLOC_67834 I
MTR_1g052470 Medicago truncatula MTR_1g052470 I
MTR_2g098310 Medicago truncatula MTR_2g098310 I
MTR_4g065870 Medicago truncatula MTR_4g065870 I
OB02G30670 Oryza brachyantha OB02G30670 I
OB08G26810 Oryza brachyantha OB08G26810 I
OBART02G23210 Oryza barthii OBART02G23210 I
OBART08G19860 Oryza barthii OBART08G19860 I
OBART09G14660 Oryza barthii OBART09G14660 I
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I
OLONG_009256 Oryza longistaminata OLONG_009256 I
OLONG_017566 Oryza longistaminata OLONG_017566 I
OMERI02G22740 Oryza meridionalis OMERI02G22740 I
OMERI08G16700 Oryza meridionalis OMERI08G16700 I
OMERI09G11370 Oryza meridionalis OMERI09G11370 I
ONIVA02G26110 Oryza nivara ONIVA02G26110 I
ONIVA08G17500 Oryza nivara ONIVA08G17500 I
ONIVA08G22410 Oryza nivara ONIVA08G22410 I
OPUNC02G21170 Oryza punctata OPUNC02G21170 I
OPUNC08G18020 Oryza punctata OPUNC08G18020 I
OPUNC09G13060 Oryza punctata OPUNC09G13060 I
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I
orange1.1g016638m.g Citrus sinensis orange1.1g016638m.g I
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I
OS08G0506700 Oryza sativa OS08G0506700 D
OS09G0487900 Oryza sativa OS09G0487900 I
Pavir.Aa01423 Panicum virgatum Pavir.Aa01423 I
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I
Pavir.Ba00676 Panicum virgatum Pavir.Ba00676 I
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I
Pavir.Bb03157 Panicum virgatum Pavir.Bb03157 I
Pavir.Fa00493 Panicum virgatum Pavir.Fa00493 I
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I
Pavir.J00377 Panicum virgatum Pavir.J00377 I
Pavir.J08536 Panicum virgatum Pavir.J08536 I
Pavir.J14004 Panicum virgatum Pavir.J14004 I
Pavir.J25484 Panicum virgatum Pavir.J25484 I
PDK_20s1302565g001 Phoenix dactylifera PDK_20s1302565g001 I
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I
PK18038.1 Cannabis sativa PK18038.1 I
PK20089.1 Cannabis sativa PK20089.1 I
Pm000447 Prunus mume Pm000447 I
Pm025821 Prunus mume Pm025821 I
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I
SapurV1A.0027s0090 Salix purpurea SapurV1A.0027s0090 I
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I
Sb02g028300 Sorghum bicolor Sb02g028300 I
Sb04g025260 Sorghum bicolor Sb04g025260 I
Sb06g020810 Sorghum bicolor Sb06g020810 I
Sb07g027810 Sorghum bicolor Sb07g027810 I
SELMODRAFT_402301 Selaginella moellendorffii SELMODRAFT_402301 I
Si010513m.g Setaria italica Si010513m.g I
Si013950m.g Setaria italica Si013950m.g I
Si029614m.g Setaria italica Si029614m.g I
Si030166m.g Setaria italica Si030166m.g I
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I
TCM_005925 Theobroma cacao TCM_005925 I
TCM_024842 Theobroma cacao TCM_024842 I
TCM_040564 Theobroma cacao TCM_040564 I
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I
Traes_5BL_4317E525B Triticum aestivum Traes_5BL_4317E525B I
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I
TRIUR3_26625 Triticum urartu TRIUR3_26625 I
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I