PGSC0003DMG400001413 (Solanum tuberosum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 PGSC0003DMG400001413 T331838_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400003573 Sox 283 300
PGSC0003DMT400003573 Sox 295 324

Links

Other Sox family TFs
Other Solanum tuberosum TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIBMGA006156 Bombyx mori BGIBMGA006156 N 0.521
BGIOSGA031227 Oryza indica BGIOSGA031227 N 0.449
Bo6g005800 Brassica oleracea Bo6g005800 N 0.519
Bra012832 Brassica rapa Bra012832 N 0.525
Ca_10726 Cicer arietinum Ca_10726 N 0.478
Cla010647 Citrullus lanatus Cla010647 N 0.493
EEL_0000370701 Elaeophora elaphi EEL_0000370701 N 0.417
fgenesh1_pg.C_scaffold_11000089 Sporobolomyces roseus fgenesh1_pg.C_scaffold_11000089 N 0.460
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.497
GPLIN_000170600 Globodera pallida GPLIN_000170600 N 0.490
HelroG178674 Helobdella robusta HelroG178674 N 0.463
JAAARDRAFT_460099 Jaapia argillacea JAAARDRAFT_460099 N 0.538
Lus10013219.g Linum usitatissimum Lus10013219.g N 0.522
Lus10016695.g Linum usitatissimum Lus10016695.g N 0.530
Lus10027787.g Linum usitatissimum Lus10027787.g N 0.506
Lus10035991.g Linum usitatissimum Lus10035991.g N 0.530
M407DRAFT_45069 Tulasnella calospora M407DRAFT_45069 N 0.558
MAC_03708 Metarhizium acridum MAC_03708 N 0.415
MBR_01289 Metarhizium brunneum MBR_01289 N 0.415
MCOS_0000664501 Mesocestoides corti MCOS_0000664501 N 0.489
MDP0000699531 Malus domestica MDP0000699531 N 0.477
Moror_8439 Moniliophthora roreri Moror_8439 N 0.425
MPER_12197 Moniliophthora perniciosa MPER_12197 N 0.425
MVLG_01553 Microbotryum violaceum MVLG_01553 N 0.460
OBART09G18880 Oryza barthii OBART09G18880 N 0.449
OGLUM09G19410 Oryza glumaepatula OGLUM09G19410 N 0.449
OLONG_009629 Oryza longistaminata OLONG_009629 N 0.480
OPUNC09G17310 Oryza punctata OPUNC09G17310 N 0.449
PAS_chr3_1149 Komagataella pastoris PAS_chr3_1149 N 0.417
PEQ_0000006801 Parascaris equorum PEQ_0000006801 N 0.437
Pm010381 Prunus mume Pm010381 N 0.526
RHTO_04537 Rhodosporidium toruloides RHTO_04537 N 0.443
SAKL0C03872g Lachancea kluyveri SAKL0C03872g N 0.424
SAKL0C03916g Lachancea kluyveri SAKL0C03916g N 0.424
SAKL0D09922g Lachancea kluyveri SAKL0D09922g N 0.421
SCHCODRAFT_110960 Schizophyllum commune SCHCODRAFT_110960 N 0.416
TCF7L2 Tursiops truncatus ENSTTRG00000002360 N 0.538
TSTA_110260 Talaromyces stipitatus TSTA_110260 N 0.496
UCREL1_5722 Eutypa lata UCREL1_5722 N 0.559
XP_002492281.1 Pichia pastoris XP_002492281.1 N 0.417