OBART09G18880 (Oryza barthii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OBART09G18880 T331576_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
OBART09G18880.1 Sox 29 75
OBART09G18880.1 Sox 81 110

Links

Other Sox family TFs
Other Oryza barthii TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA031227 Oryza indica BGIOSGA031227 N 0.741
OGLUM09G19410 Oryza glumaepatula OGLUM09G19410 N 0.741
OPUNC09G17310 Oryza punctata OPUNC09G17310 N 0.738
OLONG_009629 Oryza longistaminata OLONG_009629 N 0.628
Lus10035991.g Linum usitatissimum Lus10035991.g N 0.608
Bra012832 Brassica rapa Bra012832 N 0.605
Lus10013219.g Linum usitatissimum Lus10013219.g N 0.604
Lus10016695.g Linum usitatissimum Lus10016695.g N 0.594
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.582
Ca_10726 Cicer arietinum Ca_10726 N 0.561
Lus10027787.g Linum usitatissimum Lus10027787.g N 0.556
Cla010647 Citrullus lanatus Cla010647 N 0.526
MDP0000699531 Malus domestica MDP0000699531 N 0.501
PEQ_0000006801 Parascaris equorum PEQ_0000006801 N 0.501
EEL_0000370701 Elaeophora elaphi EEL_0000370701 N 0.484
fgenesh1_pg.C_scaffold_10000369 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_10000369 N 0.470
TCM_042534 Theobroma cacao TCM_042534 I 0.467
D917_04157 Trichinella nativa D917_04157 N 0.461
PGSC0003DMG400001413 Solanum tuberosum PGSC0003DMG400001413 N 0.449
TriadG58720 Trichoplax adhaerens TriadG58720 N 0.445
Pm010381 Prunus mume Pm010381 N 0.443
CLEC004367 Cimex lectularius CLEC004367 N 0.434
UCREL1_5722 Eutypa lata UCREL1_5722 N 0.429
ASIS002444 Anopheles sinensis ASIS002444 N 0.423
SCHCODRAFT_105718 Schizophyllum commune SCHCODRAFT_105718 N 0.421
HelroG178674 Helobdella robusta HelroG178674 N 0.417