VIT_02s0025g01220 (Vitis vinifera)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 VIT_02s0025g01220 T333231_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.476 0.683
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.476 0.683
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_02s0025g01220.t01 Sox 180 245
VIT_02s0025g01220.t01 Sox 296 362
VIT_02s0025g01220.t01 Sox 425 493

Links

Other Sox family TFs
Other Vitis vinifera TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28152.m000914 Ricinus communis 28152.m000914 N 0.000
30170.m013749 Ricinus communis 30170.m013749 N 0.000
Al_scaffold_0797_1 Arabidopsis lyrata Al_scaffold_0797_1 N 0.000
AMTR_s00164p00062120 Amborella trichopoda AMTR_s00164p00062120 N 0.000
Aquca_017_00066 Aquilegia coerulea Aquca_017_00066 N 0.000
Aquca_042_00162 Aquilegia coerulea Aquca_042_00162 N 0.000
Aquca_042_00163 Aquilegia coerulea Aquca_042_00163 N 0.000
AT2G14760 Arabidopsis thaliana AT2G14760 N 0.000
BGIOSGA010239 Oryza indica BGIOSGA010239 N 0.000
BGIOSGA011251 Oryza indica BGIOSGA011251 N 0.000
BGIOSGA023988 Oryza indica BGIOSGA023988 N 0.000
BGIOSGA035917 Oryza indica BGIOSGA035917 N 0.000
BHLH139 Arabidopsis thaliana AT5G43175 N 0.000
BHLH54 Arabidopsis thaliana AT1G27740 N 0.000
BHLH85 Arabidopsis thaliana AT4G33880 N 0.000
Bo1g007780 Brassica oleracea Bo1g007780 N 0.000
Bo3g142890 Brassica oleracea Bo3g142890 N 0.000
Bo3g169400 Brassica oleracea Bo3g169400 N 0.000
Bo5g052310 Brassica oleracea Bo5g052310 N 0.000
Bo7g048630 Brassica oleracea Bo7g048630 N 0.000
Bo7g116460 Brassica oleracea Bo7g116460 N 0.000
Bostr.15697s0100 Boechera stricta Bostr.15697s0100 N 0.000
Bostr.2199s0029 Boechera stricta Bostr.2199s0029 N 0.000
Bostr.3148s0158 Boechera stricta Bostr.3148s0158 N 0.000
Bostr.7867s1234 Boechera stricta Bostr.7867s1234 N 0.000
Bra010921 Brassica rapa Bra010921 N 0.000
Bra011476 Brassica rapa Bra011476 N 0.000
Bra030063 Brassica rapa Bra030063 N 0.000
Bra032846 Brassica rapa Bra032846 N 0.000
Bra034587 Brassica rapa Bra034587 N 0.000
Bra036969 Brassica rapa Bra036969 N 0.000
BRADI1G14600 Brachypodium distachyon BRADI1G14600 N 0.000
BRADI1G22960 Brachypodium distachyon BRADI1G22960 N 0.000
BRADI1G70860 Brachypodium distachyon BRADI1G70860 N 0.000
BRADI4G03070 Brachypodium distachyon BRADI4G03070 N 0.000
Cagra.1103s0007 Capsella grandiflora Cagra.1103s0007 N 0.000
Cagra.1305s0010 Capsella grandiflora Cagra.1305s0010 N 0.000
Cagra.1822s0081 Capsella grandiflora Cagra.1822s0081 N 0.000
Cagra.9228s0001 Capsella grandiflora Cagra.9228s0001 N 0.000
Carubv10006623m.g Capsella rubella Carubv10006623m.g N 0.000
Carubv10011072m.g Capsella rubella Carubv10011072m.g N 0.000
Carubv10015484m.g Capsella rubella Carubv10015484m.g N 0.000
Carubv10028625m.g Capsella rubella Carubv10028625m.g N 0.000
cassava14986.m1 Manihot esculenta cassava14986.m1 N 0.000
cassava20440.m1 Manihot esculenta cassava20440.m1 N 0.000
cassava25589.m1 Manihot esculenta cassava25589.m1 N 0.000
cassava38950.m1 Manihot esculenta cassava38950.m1 N 0.000
Ca_01588 Cicer arietinum Ca_01588 N 0.000
Ca_05644 Cicer arietinum Ca_05644 N 0.000
Ca_11909 Cicer arietinum Ca_11909 N 0.000
Ca_18366 Cicer arietinum Ca_18366 N 0.000
chr1.CM0088.610.nd Lotus japonicus chr1.CM0088.610.nd N 0.000
chr5.CM0096.500.nd Lotus japonicus chr5.CM0096.500.nd N 0.000
chr5.CM0200.480.nc Lotus japonicus chr5.CM0200.480.nc N 0.000
Ciclev10003450m.g Citrus clementina Ciclev10003450m.g N 0.000
Ciclev10030309m.g Citrus clementina Ciclev10030309m.g N 0.000
Cla016346 Citrullus lanatus Cla016346 N 0.000
Cla020918 Citrullus lanatus Cla020918 N 0.000
Cla022968 Citrullus lanatus Cla022968 N 0.000
Cucsa.097490 Cucumis sativus Cucsa.097490 N 0.000
Cucsa.219180 Cucumis sativus Cucsa.219180 N 0.000
Cucsa.352750 Cucumis sativus Cucsa.352750 N 0.000
Eucgr.F02259 Eucalyptus grandis Eucgr.F02259 N 0.000
Eucgr.G01234 Eucalyptus grandis Eucgr.G01234 N 0.000
Eucgr.I01069 Eucalyptus grandis Eucgr.I01069 N 0.000
evm.TU.supercontig_106.57 Carica papaya evm.TU.supercontig_106.57 N 0.000
evm.TU.supercontig_142.14 Carica papaya evm.TU.supercontig_142.14 N 0.000
F775_02582 Aegilops tauschii F775_02582 N 0.000
F775_02706 Aegilops tauschii F775_02706 N 0.000
F775_27628 Aegilops tauschii F775_27628 N 0.000
fgenesh2_kg.3__3067__AT2G14760.1 Arabidopsis lyrata fgenesh2_kg.3__3067__AT2G14760.1 N 0.000
fgenesh2_kg.8__503__AT5G43175.1 Arabidopsis lyrata fgenesh2_kg.8__503__AT5G43175.1 N 0.000
gene25555-v1.0-hybrid Fragaria vesca gene25555-v1.0-hybrid N 0.000
GLYMA04G04801 Glycine max GLYMA04G04801 N 0.000
GLYMA10G40350 Glycine max GLYMA10G40350 N 0.000
GLYMA10G40360 Glycine max GLYMA10G40360 N 0.000
GLYMA14G09781 Glycine max GLYMA14G09781 N 0.000
GLYMA17G35423 Glycine max GLYMA17G35423 N 0.000
GLYMA20G26980 Glycine max GLYMA20G26980 N 0.000
GLYMA20G26991 Glycine max GLYMA20G26991 N 0.000
Gorai.005G231900 Gossypium raimondii Gorai.005G231900 N 0.000
Gorai.009G219100 Gossypium raimondii Gorai.009G219100 N 0.000
Gorai.010G025400 Gossypium raimondii Gorai.010G025400 N 0.000
GRMZM2G057260 Zea mays GRMZM2G057260 N 0.000
GRMZM2G383841 Zea mays GRMZM2G383841 N 0.000
GRMZM2G395549 Zea mays GRMZM2G395549 N 0.000
GSMUA_Achr2G17130_001 Musa acuminata GSMUA_Achr2G17130_001 N 0.000
GSMUA_Achr3G18870_001 Musa acuminata GSMUA_Achr3G18870_001 N 0.000
GSMUA_Achr4G23240_001 Musa acuminata GSMUA_Achr4G23240_001 N 0.000
GSMUA_Achr6G07760_001 Musa acuminata GSMUA_Achr6G07760_001 N 0.000
GSMUA_Achr6G16890_001 Musa acuminata GSMUA_Achr6G16890_001 N 0.000
GSMUA_Achr9G09600_001 Musa acuminata GSMUA_Achr9G09600_001 N 0.000
GSMUA_AchrUn_randomG07080_001 Musa acuminata GSMUA_AchrUn_randomG07080_001 N 0.000
LPERR03G21650 Leersia perrieri LPERR03G21650 N 0.000
LPERR07G17840 Leersia perrieri LPERR07G17840 N 0.000
LPERR11G16970 Leersia perrieri LPERR11G16970 N 0.000
LPERR12G11190 Leersia perrieri LPERR12G11190 N 0.000
LPERR12G14550 Leersia perrieri LPERR12G14550 N 0.000
Lus10001068.g Linum usitatissimum Lus10001068.g N 0.000
Lus10004315.g Linum usitatissimum Lus10004315.g N 0.000
MDP0000131874 Malus domestica MDP0000131874 N 0.000
MDP0000145825 Malus domestica MDP0000145825 N 0.000
MDP0000198037 Malus domestica MDP0000198037 N 0.000
MDP0000573178 Malus domestica MDP0000573178 N 0.000
MDP0000946515 Malus domestica MDP0000946515 N 0.000
mgf018282m Mimulus guttatus mgf018282m N 0.000
mgf019332m Mimulus guttatus mgf019332m N 0.000
mgf022238m Mimulus guttatus mgf022238m N 0.000
mgf024863m Mimulus guttatus mgf024863m N 0.000
MLOC_60270 Hordeum vulgare MLOC_60270 N 0.000
MLOC_67369 Hordeum vulgare MLOC_67369 N 0.000
MLOC_74022 Hordeum vulgare MLOC_74022 N 0.000
MLOC_76486 Hordeum vulgare MLOC_76486 N 0.000
MTR_1g018090 Medicago truncatula MTR_1g018090 N 0.000
MTR_1g106460 Medicago truncatula MTR_1g106460 N 0.000
MTR_1g106480 Medicago truncatula MTR_1g106480 N 0.000
MTR_3g103030 Medicago truncatula MTR_3g103030 N 0.000
MTR_5g005110 Medicago truncatula MTR_5g005110 N 0.000
OB03G17860 Oryza brachyantha OB03G17860 N 0.000
OB03G34210 Oryza brachyantha OB03G34210 N 0.000
OB07G26210 Oryza brachyantha OB07G26210 N 0.000
OB12G24200 Oryza brachyantha OB12G24200 N 0.000
OBART03G07520 Oryza barthii OBART03G07520 N 0.000
OBART03G26170 Oryza barthii OBART03G26170 N 0.000
OBART12G17400 Oryza barthii OBART12G17400 N 0.000
OGLUM03G07680 Oryza glumaepatula OGLUM03G07680 N 0.000
OGLUM03G27050 Oryza glumaepatula OGLUM03G27050 N 0.000
OGLUM07G20330 Oryza glumaepatula OGLUM07G20330 N 0.000
OGLUM09G03740 Oryza glumaepatula OGLUM09G03740 N 0.000
OLONG_006157 Oryza longistaminata OLONG_006157 N 0.000
OLONG_008046 Oryza longistaminata OLONG_008046 N 0.000
OLONG_010636 Oryza longistaminata OLONG_010636 N 0.000
OLONG_014997 Oryza longistaminata OLONG_014997 N 0.000
OMERI03G07360 Oryza meridionalis OMERI03G07360 N 0.000
OMERI03G23570 Oryza meridionalis OMERI03G23570 N 0.000
OMERI07G17220 Oryza meridionalis OMERI07G17220 N 0.000
OMERI12G12030 Oryza meridionalis OMERI12G12030 N 0.000
ONIVA03G07980 Oryza nivara ONIVA03G07980 N 0.000
ONIVA03G27180 Oryza nivara ONIVA03G27180 N 0.000
ONIVA07G18960 Oryza nivara ONIVA07G18960 N 0.000
ONIVA12G13790 Oryza nivara ONIVA12G13790 N 0.000
ONIVA12G15960 Oryza nivara ONIVA12G15960 N 0.000
OPUNC03G07300 Oryza punctata OPUNC03G07300 N 0.000
OPUNC03G23870 Oryza punctata OPUNC03G23870 N 0.000
OPUNC07G19390 Oryza punctata OPUNC07G19390 N 0.000
OPUNC12G15720 Oryza punctata OPUNC12G15720 N 0.000
orange1.1g036928m.g Citrus sinensis orange1.1g036928m.g N 0.000
orange1.1g047654m.g Citrus sinensis orange1.1g047654m.g N 0.000
ORGLA03G0073500 Oryza glaberrima ORGLA03G0073500 N 0.000
ORGLA03G0242600 Oryza glaberrima ORGLA03G0242600 N 0.000
ORGLA12G0149000 Oryza glaberrima ORGLA12G0149000 N 0.000
ORUFI03G07580 Oryza rufipogon ORUFI03G07580 N 0.000
ORUFI03G27070 Oryza rufipogon ORUFI03G27070 N 0.000
ORUFI07G21430 Oryza rufipogon ORUFI07G21430 N 0.000
ORUFI12G19280 Oryza rufipogon ORUFI12G19280 N 0.000
OS03G0205300 Oryza sativa OS03G0205300 N 0.000
OS07G0588400 Oryza sativa OS07G0588400 N 0.000
OS12G0589000 Oryza sativa OS12G0589000 N 0.000
Pavir.Ba01059 Panicum virgatum Pavir.Ba01059 N 0.000
Pavir.Bb01173 Panicum virgatum Pavir.Bb01173 N 0.000
Pavir.Ia00352 Panicum virgatum Pavir.Ia00352 N 0.000
Pavir.Ia04640 Panicum virgatum Pavir.Ia04640 N 0.000
Pavir.Ib00696 Panicum virgatum Pavir.Ib00696 N 0.000
Pavir.J00626 Panicum virgatum Pavir.J00626 N 0.000
PGSC0003DMG400021526 Solanum tuberosum PGSC0003DMG400021526 N 0.000
PGSC0003DMG400036714 Solanum tuberosum PGSC0003DMG400036714 N 0.000
PGSC0003DMG400039299 Solanum tuberosum PGSC0003DMG400039299 N 0.000
PK01802.1 Cannabis sativa PK01802.1 N 0.000
Pm005392 Prunus mume Pm005392 N 0.000
Pm021172 Prunus mume Pm021172 N 0.000
POPTR_0001s30150 Populus trichocarpa POPTR_0001s30150 N 0.000
POPTR_0002s12000 Populus trichocarpa POPTR_0002s12000 N 0.000
POPTR_0009s09210 Populus trichocarpa POPTR_0009s09210 N 0.000
POPTR_0014s01730 Populus trichocarpa POPTR_0014s01730 N 0.000
PRUPE_ppa015160mg Prunus persica PRUPE_ppa015160mg N 0.000
RSL2 Arabidopsis lyrata fgenesh2_kg.7__724__AT4G33880.1 N 0.000
RSL4 Arabidopsis lyrata fgenesh2_kg.1__2933__AT1G27740.1 N 0.000
SapurV1A.0005s0400 Salix purpurea SapurV1A.0005s0400 N 0.000
SapurV1A.0019s0320 Salix purpurea SapurV1A.0019s0320 N 0.000
SapurV1A.0476s0200 Salix purpurea SapurV1A.0476s0200 N 0.000
SapurV1A.0845s0110 Salix purpurea SapurV1A.0845s0110 N 0.000
SapurV1A.2301s0020 Salix purpurea SapurV1A.2301s0020 N 0.000
Sb01g007160 Sorghum bicolor Sb01g007160 N 0.000
Sb02g037990 Sorghum bicolor Sb02g037990 N 0.000
Sb05g025230 Sorghum bicolor Sb05g025230 N 0.000
SELMODRAFT_404767 Selaginella moellendorffii SELMODRAFT_404767 N 0.000
SELMODRAFT_419388 Selaginella moellendorffii SELMODRAFT_419388 N 0.000
Si032445m.g Setaria italica Si032445m.g N 0.000
Si039720m.g Setaria italica Si039720m.g N 0.000
Solyc01g107140.1 Solanum lycopersicum Solyc01g107140.1 N 0.000
Solyc04g077960.1 Solanum lycopersicum Solyc04g077960.1 N 0.000
TCM_007220 Theobroma cacao TCM_007220 N 0.000
TCM_034717 Theobroma cacao TCM_034717 N 0.000
Thhalv10003393m.g Eutrema salsugineum Thhalv10003393m.g N 0.000
Thhalv10009862m.g Eutrema salsugineum Thhalv10009862m.g N 0.000
Thhalv10026786m.g Eutrema salsugineum Thhalv10026786m.g N 0.000
Traes_2AS_9A3F73BE3 Triticum aestivum Traes_2AS_9A3F73BE3 N 0.000
Traes_2BS_659F9ABB9 Triticum aestivum Traes_2BS_659F9ABB9 N 0.000
Traes_2DS_7C9C33E09 Triticum aestivum Traes_2DS_7C9C33E09 N 0.000
Traes_4AL_6A6EC9A6A Triticum aestivum Traes_4AL_6A6EC9A6A N 0.000
Traes_4AS_7530AAEB4 Triticum aestivum Traes_4AS_7530AAEB4 N 0.000
Traes_4BS_9BFCC52AD Triticum aestivum Traes_4BS_9BFCC52AD N 0.000
Traes_4DL_61AE80723 Triticum aestivum Traes_4DL_61AE80723 N 0.000
Traes_4DS_7488F4608 Triticum aestivum Traes_4DS_7488F4608 N 0.000
Traes_5AS_5B9D5E067 Triticum aestivum Traes_5AS_5B9D5E067 N 0.000
Traes_5BL_E1D1D198E Triticum aestivum Traes_5BL_E1D1D198E N 0.000
Traes_5BS_0F8DBB33D Triticum aestivum Traes_5BS_0F8DBB33D N 0.000
Traes_5DS_51467BEB4 Triticum aestivum Traes_5DS_51467BEB4 N 0.000
TRIUR3_01454 Triticum urartu TRIUR3_01454 N 0.000
TRIUR3_17670 Triticum urartu TRIUR3_17670 N 0.000
TRIUR3_24341 Triticum urartu TRIUR3_24341 N 0.000
VIT_03s0091g00730 Vitis vinifera VIT_03s0091g00730 N 0.000
VIT_18s0001g09210 Vitis vinifera VIT_18s0001g09210 N 0.000