GPLIN_000239300 (Globodera pallida)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 GPLIN_000239300 T336332_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000239300 Sox 22 90

Links

Other Sox family TFs
Other Globodera pallida TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30055.m001542 Ricinus communis 30055.m001542 N 0.000
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N 0.000
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.000
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.000
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.000
BGIOSGA000452 Oryza indica BGIOSGA000452 N 0.000
BGIOSGA030484 Oryza indica BGIOSGA030484 N 0.000
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.000
Bo5g081360 Brassica oleracea Bo5g081360 N 0.000
BRADI2G55540 Brachypodium distachyon BRADI2G55540 N 0.000
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.000
BRADI4G27770 Brachypodium distachyon BRADI4G27770 N 0.000
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.000
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.000
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.000
Ca_07051 Cicer arietinum Ca_07051 N 0.000
Ca_16482 Cicer arietinum Ca_16482 N 0.000
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.000
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.000
Cla000184 Citrullus lanatus Cla000184 N 0.000
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.000
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N 0.000
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.000
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.000
Eucgr.J01266 Eucalyptus grandis Eucgr.J01266 N 0.000
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.000
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.000
F775_11193 Aegilops tauschii F775_11193 N 0.000
F775_14972 Aegilops tauschii F775_14972 N 0.000
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.000
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.000
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.000
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.000
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.000
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.000
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.000
GRMZM2G000836 Zea mays GRMZM2G000836 N 0.000
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.000
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.000
GRMZM2G150011 Zea mays GRMZM2G150011 N 0.000
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.000
GSMUA_Achr11G18950_001 Musa acuminata GSMUA_Achr11G18950_001 N 0.000
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.000
GSMUA_Achr5G26210_001 Musa acuminata GSMUA_Achr5G26210_001 N 0.000
GSMUA_Achr6G01410_001 Musa acuminata GSMUA_Achr6G01410_001 N 0.000
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.000
LPERR01G32600 Leersia perrieri LPERR01G32600 N 0.000
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.000
LPERR09G03450 Leersia perrieri LPERR09G03450 N 0.000
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.000
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.000
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.000
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.000
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.000
MDP0000131949 Malus domestica MDP0000131949 N 0.000
MDP0000300013 Malus domestica MDP0000300013 N 0.000
mgf022319m Mimulus guttatus mgf022319m N 0.000
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.000
MLOC_54308 Hordeum vulgare MLOC_54308 N 0.000
OB05G26090 Oryza brachyantha OB05G26090 N 0.000
OB08G26650 Oryza brachyantha OB08G26650 N 0.000
OBART01G37960 Oryza barthii OBART01G37960 N 0.000
OBART02G07320 Oryza barthii OBART02G07320 N 0.000
OBART08G19670 Oryza barthii OBART08G19670 N 0.000
OGLUM01G42130 Oryza glumaepatula OGLUM01G42130 N 0.000
OGLUM05G19360 Oryza glumaepatula OGLUM05G19360 N 0.000
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.000
OGLUM09G05550 Oryza glumaepatula OGLUM09G05550 N 0.000
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.000
OMERI01G34920 Oryza meridionalis OMERI01G34920 N 0.000
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.000
OMERI09G03940 Oryza meridionalis OMERI09G03940 N 0.000
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.000
ONIVA04G25710 Oryza nivara ONIVA04G25710 N 0.000
ONIVA08G08420 Oryza nivara ONIVA08G08420 N 0.000
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.000
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.000
OPUNC01G36780 Oryza punctata OPUNC01G36780 N 0.000
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.000
OPUNC09G04260 Oryza punctata OPUNC09G04260 N 0.000
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.000
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.000
ORGLA01G0317700 Oryza glaberrima ORGLA01G0317700 N 0.000
ORGLA02G0068500 Oryza glaberrima ORGLA02G0068500 N 0.000
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.000
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.000
ORUFI01G41290 Oryza rufipogon ORUFI01G41290 N 0.000
ORUFI09G05390 Oryza rufipogon ORUFI09G05390 N 0.000
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.000
OS01G0859100 Oryza sativa OS01G0859100 N 0.000
OS02G0196100 Oryza sativa OS02G0196100 N 0.000
OS08G0504000 Oryza sativa OS08G0504000 N 0.000
OS09G0307400 Oryza sativa OS09G0307400 N 0.000
OS09G0485600 Oryza sativa OS09G0485600 N 0.000
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.000
Pavir.Ba03009 Panicum virgatum Pavir.Ba03009 N 0.000
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.000
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.000
Pavir.J11927 Panicum virgatum Pavir.J11927 N 0.000
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.000
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.000
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N 0.000
PK05257.1 Cannabis sativa PK05257.1 N 0.000
Pm001374 Prunus mume Pm001374 N 0.000
POPTR_0001s05630 Populus trichocarpa POPTR_0001s05630 N 0.000
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.000
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.000
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.000
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.000
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.000
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.000
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.000
Sb02g020840 Sorghum bicolor Sb02g020840 N 0.000
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.000
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.000
Sb09g021850 Sorghum bicolor Sb09g021850 N 0.000
Si013819m.g Setaria italica Si013819m.g N 0.000
Si022296m.g Setaria italica Si022296m.g N 0.000
Si029897m.g Setaria italica Si029897m.g N 0.000
Si030360m.g Setaria italica Si030360m.g N 0.000
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.000
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.000
TCM_041441 Theobroma cacao TCM_041441 N 0.000
TRAES3BF099700020CFD_g Triticum aestivum TRAES3BF099700020CFD_g N 0.000
Traes_5BL_46BDE583B Triticum aestivum Traes_5BL_46BDE583B N 0.000
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.000
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.000
Traes_5DL_98FA0887C Triticum aestivum Traes_5DL_98FA0887C N 0.000
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.000
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.000
TRIUR3_30537 Triticum urartu TRIUR3_30537 N 0.000
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.000