cassava43608.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava43608.valid.m1 T006943_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF023
M06560_2.00 		Arabidopsis thaliana
DYCACCGACANHDNN
NNHDNTGTCGGTGRH		 Dap-seq
OMalley et al.(2016)
AT1G01250_col_a 		0.758 0.900
ERF023
M06561_2.00 		Arabidopsis thaliana
HHNHHDHCACCGACA
TGTCGGTGDHDDNDD		 Dap-seq
OMalley et al.(2016)
AT1G01250_colamp_a 		0.758 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava43608.valid.m1 AP2 34 85

Links

Other AP2 family TFs
Other Manihot esculenta TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD33 Arabidopsis lyrata Al_scaffold_0006_527 N
LBD33 Arabidopsis thaliana AT5G06080 N
Bostr.13129s0366 Boechera stricta Bostr.13129s0366 N
Bo9g176580 Brassica oleracea Bo9g176580 N
Bra009161 Brassica rapa Bra009161 N
PK00972.1 Cannabis sativa PK00972.1 I
PK23380.1 Cannabis sativa PK23380.1 I
Cagra.2117s0054 Capsella grandiflora Cagra.2117s0054 N
Carubv10002921m.g Capsella rubella Carubv10002921m.g N
evm.TU.supercontig_1.438 Carica papaya evm.TU.supercontig_1.438 I
Ca_16122 Cicer arietinum Ca_16122 N
Cla004059 Citrullus lanatus Cla004059 N
Ciclev10033354m.g Citrus clementina Ciclev10033354m.g I
Cucsa.165150 Cucumis sativus Cucsa.165150 N
Eucgr.G02955 Eucalyptus grandis Eucgr.G02955 I
Thhalv10015772m.g Eutrema salsugineum Thhalv10015772m.g N
gene26330-v1.0-hybrid Fragaria vesca gene26330-v1.0-hybrid N
GLYMA14G07260 Glycine max GLYMA14G07260 N
GLYMA02G41710 Glycine max GLYMA02G41710 N
Gorai.011G267700 Gossypium raimondii Gorai.011G267700 I
Lus10004707.g Linum usitatissimum Lus10004707.g N
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I
LjSGA_054888.1 Lotus japonicus LjSGA_054888.1 I
MDP0000133936 Malus domestica MDP0000133936 N
cassava34632.m1 Manihot esculenta cassava34632.m1 N
cassava15468.m1 Manihot esculenta cassava15468.m1 I
MTR_5g080470 Medicago truncatula MTR_5g080470 N
mgf020558m Mimulus guttatus mgf020558m N
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I
POPTR_0010s20800 Populus trichocarpa POPTR_0010s20800 I
Pm018835 Prunus mume Pm018835 N
PRUPE_ppa018815mg Prunus persica PRUPE_ppa018815mg N
30143.m001171 Ricinus communis 30143.m001171 N
SapurV1A.0281s0190 Salix purpurea SapurV1A.0281s0190 I
TCM_042730 Theobroma cacao TCM_042730 I
LBD33 Vitis vinifera VIT_13s0019g02060 N