ARID5B (Sus scrofa)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSSSCG00000010219 T014776_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.785 0.988
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.785 0.988
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.785 0.988
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.785 0.988
Arid5a
M00116_2.00 		Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770 		0.632 0.733
Arid5a
M01663_2.00 		Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121 		0.632 0.733
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.605 0.616
e_gw.4.260.1_CONSTRUCT
M01668_2.00 		PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122 		0.482 0.593
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000010895 ARID/BRIGHT 78 164

Links

Other ARID/BRIGHT family TFs
Other Sus scrofa TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBN16902 Caenorhabditis brenneri CBN16902 I 0.000
CBN04619 Caenorhabditis brenneri CBN04619 I 0.000
CBN03769 Caenorhabditis brenneri CBN03769 I 0.000
CBN03440 Caenorhabditis brenneri CBN03440 I 0.000
CBG01395 Caenorhabditis briggsae CBG01395 N 0.000
CBG20699 Caenorhabditis briggsae CBG20699 I 0.000
CBG16375 Caenorhabditis briggsae CBG16375 I 0.000
CBG12152 Caenorhabditis briggsae CBG12152 I 0.000
CBG03688 Caenorhabditis briggsae CBG03688 I 0.000
CBG03687 Caenorhabditis briggsae CBG03687 I 0.000
nhr-273 Caenorhabditis elegans WBGene00020460 I 0.000
nhr-109 Caenorhabditis elegans WBGene00003699 I 0.000
nhr-86 Caenorhabditis elegans WBGene00003676 D 0.000
nhr-70 Caenorhabditis elegans WBGene00003660 D 0.000
nhr-28 Caenorhabditis elegans WBGene00003624 I 0.000
nhr-16 Caenorhabditis elegans WBGene00003615 I 0.000
nhr-12 Caenorhabditis elegans WBGene00003611 I 0.000
CJA04414 Caenorhabditis japonica CJA04414 I 0.000
CJA07390 Caenorhabditis japonica CJA07390 I 0.000
CJA10576 Caenorhabditis japonica CJA10576 I 0.000
CRE18529 Caenorhabditis remanei CRE18529 I 0.000
CRE17355 Caenorhabditis remanei CRE17355 I 0.000
CRE07801 Caenorhabditis remanei CRE07801 I 0.000
CRE17310 Caenorhabditis remanei CRE17310 I 0.000
CRE17311 Caenorhabditis remanei CRE17311 N 0.000
CRE17354 Caenorhabditis remanei CRE17354 I 0.000
CRE27659 Caenorhabditis remanei CRE27659 I 0.000
CRE27174 Caenorhabditis remanei CRE27174 I 0.000
EVEC_0001266201 Enterobius vermicularis EVEC_0001266201 I 0.000
scaffold260-EXSNAP2012.15 Pristionchus exspectatus scaffold260-EXSNAP2012.15 I 0.000
scaffold183-EXSNAP2012.18 Pristionchus exspectatus scaffold183-EXSNAP2012.18 I 0.000
scaffold1235-EXSNAP2012.2 Pristionchus exspectatus scaffold1235-EXSNAP2012.2 I 0.000
PPA29361 Pristionchus pacificus PPA29361 I 0.000
PPA10478 Pristionchus pacificus PPA10478 I 0.000
PPA08785 Pristionchus pacificus PPA08785 I 0.000
L596_g9106 Steinernema carpocapsae L596_g9106 I 0.000
L596_g27786 Steinernema carpocapsae L596_g27786 I 0.000
L889_g987 Steinernema feltiae L889_g987 I 0.000
L889_g9698 Steinernema feltiae L889_g9698 I 0.000
L893_g4569 Steinernema glaseri L893_g4569 I 0.000
L893_g9517 Steinernema glaseri L893_g9517 I 0.000
L898_g10723 Steinernema monticolum L898_g10723 I 0.000
L898_g28806 Steinernema monticolum L898_g28806 I 0.000
L892_g10708 Steinernema scapterisci L892_g10708 I 0.000
L892_g8140 Steinernema scapterisci L892_g8140 I 0.000
L892_g8144 Steinernema scapterisci L892_g8144 I 0.000
L892_g8145 Steinernema scapterisci L892_g8145 I 0.000
SMUV_0000801801 Syphacia muris SMUV_0000801801 I 0.000
SMUV_0000886001 Syphacia muris SMUV_0000886001 I 0.000