TCM_020866 (Theobroma cacao)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 TCM_020866 T045394_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH34
M01704_2.00 		Arabidopsis thaliana
VCACGYGH
DCRCGTGB		 PBM
Weirauch et al.(2014)
pTH7212 		0.843 0.769
BHLH34
M06734_2.00 		Arabidopsis thaliana
NNNHNNDNNNNVCACGTGHCN
NGDCACGTGBNNNNHNNDNNN		 Dap-seq
OMalley et al.(2016)
bHLH34_colamp_a 		0.843 0.769
BHLH34
M06735_2.00 		Arabidopsis thaliana
RWRNNNNNCACGTGBNNNNNNNN
NNNNNNNNVCACGTGNNNNNYWY		 Dap-seq
OMalley et al.(2016)
bHLH34_col 		0.843 0.769
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY06012 bHLH 65 116
EOY06013 bHLH 62 112

Links

Other bHLH family TFs
Other Theobroma cacao TFs

12 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SCL14 Arabidopsis thaliana AT1G07530 N 0.000
Bostr.27991s0167 Boechera stricta Bostr.27991s0167 N 0.000
Bostr.25219s0207 Boechera stricta Bostr.25219s0207 N 0.000
Bo01118s010 Brassica oleracea Bo01118s010 N 0.000
Bra030688 Brassica rapa Bra030688 N 0.000
Cagra.1671s0373 Capsella grandiflora Cagra.1671s0373 N 0.000
Cagra.3264s0006 Capsella grandiflora Cagra.3264s0006 N 0.000
Carubv10024938m.g Capsella rubella Carubv10024938m.g N 0.000
Carubv10008391m.g Capsella rubella Carubv10008391m.g N 0.000
evm.TU.supercontig_81.126 Carica papaya evm.TU.supercontig_81.126 N 0.000
evm.TU.supercontig_81.124 Carica papaya evm.TU.supercontig_81.124 N 0.000
evm.TU.supercontig_81.123 Carica papaya evm.TU.supercontig_81.123 N 0.000
Ca_16678 Cicer arietinum Ca_16678 N 0.000
Ciclev10027848m.g Citrus clementina Ciclev10027848m.g N 0.000
orange1.1g046158m.g Citrus sinensis orange1.1g046158m.g N 0.000
Eucgr.J02042 Eucalyptus grandis Eucgr.J02042 N 0.000
Eucgr.B02350 Eucalyptus grandis Eucgr.B02350 N 0.000
Thhalv10006868m.g Eutrema salsugineum Thhalv10006868m.g N 0.000
gene34381-v1.0-hybrid Fragaria vesca gene34381-v1.0-hybrid N 0.000
gene30167-v1.0-hybrid Fragaria vesca gene30167-v1.0-hybrid N 0.000
gene18433-v1.0-hybrid Fragaria vesca gene18433-v1.0-hybrid N 0.000
GLYMA13G41240 Glycine max GLYMA13G41240 N 0.000
GLYMA12G06670 Glycine max GLYMA12G06670 N 0.000
GLYMA11G14750 Glycine max GLYMA11G14750 N 0.000
Gorai.003G130600 Gossypium raimondii Gorai.003G130600 N 0.000
Gorai.001G111500 Gossypium raimondii Gorai.001G111500 N 0.000
Lus10040790.g Linum usitatissimum Lus10040790.g N 0.000
Lus10016521.g Linum usitatissimum Lus10016521.g N 0.000
cassava19450.valid.m1 Manihot esculenta cassava19450.valid.m1 N 0.000
MTR_4g064160 Medicago truncatula MTR_4g064160 N 0.000
POPTR_0001s24850 Populus trichocarpa POPTR_0001s24850 N 0.000
POPTR_0009s03790 Populus trichocarpa POPTR_0009s03790 N 0.000
POPTR_0009s03800 Populus trichocarpa POPTR_0009s03800 N 0.000
PRUPE_ppa003149mg Prunus persica PRUPE_ppa003149mg N 0.000
28650.m000191 Ricinus communis 28650.m000191 N 0.000
SapurV1A.0001s1700 Salix purpurea SapurV1A.0001s1700 N 0.000
SapurV1A.0040s0470 Salix purpurea SapurV1A.0040s0470 N 0.000
SapurV1A.0041s0160 Salix purpurea SapurV1A.0041s0160 N 0.000
SapurV1A.4599s0010 Salix purpurea SapurV1A.4599s0010 N 0.000
Solyc06g076280.1 Solanum lycopersicum Solyc06g076280.1 N 0.000
TCM_041814 Theobroma cacao TCM_041814 N 0.000
TCM_041815 Theobroma cacao TCM_041815 N 0.000
Traes_4DS_050789E2A Triticum aestivum Traes_4DS_050789E2A N 0.000
VIT_06s0004g04950 Vitis vinifera VIT_06s0004g04950 N 0.000
VIT_06s0004g04960 Vitis vinifera VIT_06s0004g04960 N 0.000