Cagra.18223s0002 (Capsella grandiflora)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cagra.18223s0002 T049270_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH80
M06722_2.00 		Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH80_col_a 		0.914 0.961
BHLH80
M06723_2.00 		Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH		 Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a 		0.914 0.961
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.873 0.882
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.18223s0002.1.p bHLH 195 245

Links

Other bHLH family TFs
Other Capsella grandiflora TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_24151 Aegilops tauschii F775_24151 I 0.873
AMTR_s00070p00149100 Amborella trichopoda AMTR_s00070p00149100 I 0.903
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.861
Aquca_058_00134 Aquilegia coerulea Aquca_058_00134 I 0.865
fgenesh2_kg.4__2475__AT2G43140.1 Arabidopsis lyrata fgenesh2_kg.4__2475__AT2G43140.1 I 0.845
fgenesh2_kg.6__2924__AT4G09180.1 Arabidopsis lyrata fgenesh2_kg.6__2924__AT4G09180.1 I 0.914
scaffold_103992.1 Arabidopsis lyrata scaffold_103992.1 I 0.914
BHLH80 Arabidopsis thaliana AT1G35460 D 0.914
AT2G43140 Arabidopsis thaliana AT2G43140 I 0.845
BHLH81 Arabidopsis thaliana AT4G09180 I 0.914
Bostr.1774s0027 Boechera stricta Bostr.1774s0027 I 0.914
Bostr.25463s0393 Boechera stricta Bostr.25463s0393 I 0.914
Bostr.25993s0461 Boechera stricta Bostr.25993s0461 I 0.845
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.873
Bo3g036400 Brassica oleracea Bo3g036400 I 0.845
Bo4g019620 Brassica oleracea Bo4g019620 I 0.845
Bo5g085170 Brassica oleracea Bo5g085170 I 0.879
Bo6g043840 Brassica oleracea Bo6g043840 I 0.914
Bo8g026850 Brassica oleracea Bo8g026850 I 0.914
Bra000291 Brassica rapa Bra000291 I 0.845
Bra004748 Brassica rapa Bra004748 I 0.845
Bra028088 Brassica rapa Bra028088 I 0.914
Bra034421 Brassica rapa Bra034421 I 0.879
Bra036760 Brassica rapa Bra036760 I 0.914
PK06301.1 Cannabis sativa PK06301.1 I 0.914
PK07850.1 Cannabis sativa PK07850.1 I 0.845
PK18038.1 Cannabis sativa PK18038.1 I 0.861
Cagra.3706s0004 Capsella grandiflora Cagra.3706s0004 I 0.845
Cagra.9781s0002 Capsella grandiflora Cagra.9781s0002 I 0.914
Carubv10001721m.g Capsella rubella Carubv10001721m.g I 0.914
Carubv10010050m.g Capsella rubella Carubv10010050m.g I 0.914
Carubv10023683m.g Capsella rubella Carubv10023683m.g I 0.845
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.861
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.848
Ca_26916 Cicer arietinum Ca_26916 I 0.840
Cla017792 Citrullus lanatus Cla017792 I 0.861
Ciclev10002083m.g Citrus clementina Ciclev10002083m.g I 0.914
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.861
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I 0.861
orange1.1g023215m.g Citrus sinensis orange1.1g023215m.g I 0.914
Cucsa.061590 Cucumis sativus Cucsa.061590 I 0.914
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.861
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.861
Thhalv10016998m.g Eutrema salsugineum Thhalv10016998m.g I 0.845
Thhalv10028883m.g Eutrema salsugineum Thhalv10028883m.g I 0.914
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.861
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.861
gene26880-v1.0-hybrid Fragaria vesca gene26880-v1.0-hybrid I 0.914
GLYMA08G26110 Glycine max GLYMA08G26110 I 0.914
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.861
GLYMA20G39220 Glycine max GLYMA20G39220 I 0.845
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.861
Gorai.004G035800 Gossypium raimondii Gorai.004G035800 I 0.858
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.861
Gorai.011G144600 Gossypium raimondii Gorai.011G144600 I 0.845
Gorai.013G138300 Gossypium raimondii Gorai.013G138300 I 0.914
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.873
LPERR02G18900 Leersia perrieri LPERR02G18900 I 0.845
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.861
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.861
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.861
chr5.LjT42F22.20.nc Lotus japonicus chr5.LjT42F22.20.nc I 0.845
MDP0000180376 Malus domestica MDP0000180376 I 0.861
MDP0000269890 Malus domestica MDP0000269890 I 0.914
MDP0000273574 Malus domestica MDP0000273574 I 0.845
cassava13743.valid.m1 Manihot esculenta cassava13743.valid.m1 I 0.914
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.861
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.858
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.861
cassava35513.valid.m1 Manihot esculenta cassava35513.valid.m1 I 0.848
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.861
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.861
MTR_3g027650 Medicago truncatula MTR_3g027650 I 0.848
MTR_3g028520 Medicago truncatula MTR_3g028520 I 0.848
MTR_4g033295 Medicago truncatula MTR_4g033295 I 0.888
mgf002701m Mimulus guttatus mgf002701m I 0.914
mgf005043m Mimulus guttatus mgf005043m I 0.845
mgf016734m Mimulus guttatus mgf016734m I 0.861
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.861
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.849
OBART02G23210 Oryza barthii OBART02G23210 I 0.845
OBART08G19860 Oryza barthii OBART08G19860 I 0.873
OBART09G14660 Oryza barthii OBART09G14660 I 0.873
OB02G30670 Oryza brachyantha OB02G30670 I 0.845
OB08G26810 Oryza brachyantha OB08G26810 I 0.873
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I 0.845
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.873
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.873
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.873
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.873
BGIOSGA008576 Oryza indica BGIOSGA008576 I 0.845
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.873
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.873
OLONG_009256 Oryza longistaminata OLONG_009256 I 0.845
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.873
OMERI02G22740 Oryza meridionalis OMERI02G22740 I 0.845
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.873
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.873
ONIVA02G26110 Oryza nivara ONIVA02G26110 I 0.845
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.873
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.873
OPUNC02G21170 Oryza punctata OPUNC02G21170 I 0.845
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.873
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.873
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I 0.845
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.873
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.873
OS08G0506700 Oryza sativa OS08G0506700 D 0.873
OS09G0487900 Oryza sativa OS09G0487900 I 0.873
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I 0.845
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I 0.845
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I 0.845
Pavir.J08536 Panicum virgatum Pavir.J08536 I 0.845
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.861
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.858
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.858
e_gw1.34.393.1 Physcomitrella patens e_gw1.34.393.1 I 0.858
gw1.185.89.1 Physcomitrella patens gw1.185.89.1 I 0.869
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.861
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.858
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.861
Pm000447 Prunus mume Pm000447 I 0.861
Pm004181 Prunus mume Pm004181 I 0.914
Pm007619 Prunus mume Pm007619 I 0.845
Pm025821 Prunus mume Pm025821 I 0.861
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.861
PRUPE_ppa011017mg Prunus persica PRUPE_ppa011017mg I 0.914
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.861
PRUPE_ppa025178mg Prunus persica PRUPE_ppa025178mg I 0.845
29216.m000261 Ricinus communis 29216.m000261 I 0.861
30074.m001421 Ricinus communis 30074.m001421 I 0.858
30149.m000231 Ricinus communis 30149.m000231 I 0.848
30152.m002405 Ricinus communis 30152.m002405 I 0.858
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.861
SapurV1A.0071s0010 Salix purpurea SapurV1A.0071s0010 I 0.845
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.846
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.861
SapurV1A.0391s0050 Salix purpurea SapurV1A.0391s0050 I 0.914
SapurV1A.0402s0180 Salix purpurea SapurV1A.0402s0180 I 0.845
SapurV1A.0529s0060 Salix purpurea SapurV1A.0529s0060 I 0.845
SapurV1A.0690s0120 Salix purpurea SapurV1A.0690s0120 I 0.914
SapurV1A.1647s0020 Salix purpurea SapurV1A.1647s0020 I 0.914
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.846
Si010513m.g Setaria italica Si010513m.g I 0.845
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.858
Solyc06g065040.2 Solanum lycopersicum Solyc06g065040.2 I 0.914
Solyc09g098110.2 Solanum lycopersicum Solyc09g098110.2 I 0.845
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I 0.861
Solyc11g056650.1 Solanum lycopersicum Solyc11g056650.1 I 0.857
PGSC0003DMG400006569 Solanum tuberosum PGSC0003DMG400006569 I 0.845
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.861
PGSC0003DMG400022058 Solanum tuberosum PGSC0003DMG400022058 I 0.857
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.858
PGSC0003DMG400031314 Solanum tuberosum PGSC0003DMG400031314 I 0.914
Sb04g025260 Sorghum bicolor Sb04g025260 I 0.845
Sb06g020810 Sorghum bicolor Sb06g020810 I 0.845
TCM_005925 Theobroma cacao TCM_005925 I 0.858
TCM_020066 Theobroma cacao TCM_020066 I 0.845
TCM_024842 Theobroma cacao TCM_024842 I 0.861
TCM_036484 Theobroma cacao TCM_036484 I 0.914
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.873
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.873
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.873
VIT_05s0124g00240 Vitis vinifera VIT_05s0124g00240 I 0.845
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.861
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.858
VIT_18s0041g00690 Vitis vinifera VIT_18s0041g00690 I 0.914
GRMZM2G437481 Zea mays GRMZM2G437481 I 0.845