SapurV1A.0249s0140 (Salix purpurea)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 SapurV1A.0249s0140 T051048_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.866 0.917
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.866 0.875
BIM2
M01701_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8089 		0.863 0.542
BIM2
M06727_2.00 		Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_colamp 		0.863 0.542
BIM2
M06728_2.00 		Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_col_v3b 		0.863 0.542
UNE10
M01705_2.00 		Arabidopsis thaliana
HCACGTGM
KCACGTGD		 PBM
Weirauch et al.(2014)
pTH8112 		0.857 0.667
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.849 0.646
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.849 0.646
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.849 0.646
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.849 0.646
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.849 0.646
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.849 0.646
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.847 0.479
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.843 0.542
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.843 0.542
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.843 0.542
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.843 0.542
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SapurV1A.0249s0140.1.p bHLH 304 351
SapurV1A.0249s0140.2.p bHLH 304 351

Links

Other bHLH family TFs
Other Salix purpurea TFs

555 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G02640 Brachypodium distachyon BRADI1G02640 N
BRADI1G02650 Brachypodium distachyon BRADI1G02650 N
BRADI2G07090 Brachypodium distachyon BRADI2G07090 N
BRADI3G01960 Brachypodium distachyon BRADI3G01960 N
estExt_fgeneshCV_pm.C_10002 Chlorella vulgaris estExt_fgeneshCV_pm.C_10002 N
estExt_fgenesh1_pg.C_10541 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_10541 N
LPERR02G01370 Leersia perrieri LPERR02G01370 N
LPERR08G02000 Leersia perrieri LPERR08G02000 N
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N
OBART01G18890 Oryza barthii OBART01G18890 N
OBART02G01600 Oryza barthii OBART02G01600 N
OBART03G12460 Oryza barthii OBART03G12460 N
OBART05G23340 Oryza barthii OBART05G23340 N
ORGLA08G0012100 Oryza glaberrima ORGLA08G0012100 N
ORGLA02G0014700 Oryza glaberrima ORGLA02G0014700 N
ORGLA01G0154500 Oryza glaberrima ORGLA01G0154500 N
OGLUM03G12500 Oryza glumaepatula OGLUM03G12500 N
OGLUM05G24680 Oryza glumaepatula OGLUM05G24680 N
OGLUM02G01470 Oryza glumaepatula OGLUM02G01470 N
OGLUM01G22480 Oryza glumaepatula OGLUM01G22480 N
BGIOSGA007226 Oryza indica BGIOSGA007226 N
BGIOSGA027713 Oryza indica BGIOSGA027713 N
BGIOSGA003725 Oryza indica BGIOSGA003725 N
OMERI02G00930 Oryza meridionalis OMERI02G00930 N
OMERI08G01940 Oryza meridionalis OMERI08G01940 N
ONIVA05G24030 Oryza nivara ONIVA05G24030 N
ONIVA01G18720 Oryza nivara ONIVA01G18720 N
ONIVA02G01490 Oryza nivara ONIVA02G01490 N
ONIVA08G01720 Oryza nivara ONIVA08G01720 N
ONIVA01G21440 Oryza nivara ONIVA01G21440 N
OPUNC02G01060 Oryza punctata OPUNC02G01060 N
ORUFI01G21290 Oryza rufipogon ORUFI01G21290 N
ORUFI02G01580 Oryza rufipogon ORUFI02G01580 N
ORUFI03G13150 Oryza rufipogon ORUFI03G13150 N
ORUFI05G24780 Oryza rufipogon ORUFI05G24780 N
ORUFI08G02050 Oryza rufipogon ORUFI08G02050 N
OS01G0546250 Oryza sativa OS01G0546250 N
OS02G0121100 Oryza sativa OS02G0121100 N
OS03G0277800 Oryza sativa OS03G0277800 N
OS05G0524666 Oryza sativa OS05G0524666 N
OS08G0129200 Oryza sativa OS08G0129200 N
Pavir.J33349 Panicum virgatum Pavir.J33349 N
Pavir.J33226 Panicum virgatum Pavir.J33226 N
Pavir.Ab00211 Panicum virgatum Pavir.Ab00211 N
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N
POPTR_0005s15990 Populus trichocarpa POPTR_0005s15990 N
POPTR_0002s08740 Populus trichocarpa POPTR_0002s08740 N
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I
Sb04g001720 Sorghum bicolor Sb04g001720 N
Sb06g029650 Sorghum bicolor Sb06g029650 N
Traes_6AS_539B381F1 Triticum aestivum Traes_6AS_539B381F1 N
TRIUR3_31144 Triticum urartu TRIUR3_31144 N
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I
GRMZM2G389768 Zea mays GRMZM2G389768 N
GRMZM5G895313 Zea mays GRMZM5G895313 N