hlfb (Gasterosteus aculeatus)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00170 (bZIP_1) IPR011616 ENSGACG00000010103 T059795_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HLF
M02831_2.00 		Homo sapiens
NRTTAYRTAABN
NVTTAYRTAAYN		 SELEX
Jolma et al.(2013)
HLF_1 		0.826 0.879
Hlf
M02860_2.00 		Mus musculus
KRTTACGTAAYN
NRTTACGTAAYM		 SELEX
Jolma et al.(2013)
Hlf_1 		0.826 0.879
HLF
M04245_2.00 		Homo sapiens
NVTTRCRYAABN
NVTTRYGYAABN		 SELEX
Yin et al.(2017)
HLF_FL_HT-SELEX 		0.826 0.879
HLF
M04016_2.00 		Homo sapiens
RTKAYRTAAB
VTTAYRTMAY		 SELEX
Rodriguez-Martinez et al.(2017)
HLF.1 		0.826 0.879
HLF
M08786_2.00 		Homo sapiens
NRTTRYGTAAYMS
SKRTTACRYAAYN		 Misc
Kulakovskiy et al.(2013)
HLF_HUMAN.H11MO.0.C 		0.826 0.879
Hlf
M08815_2.00 		Mus musculus
VTTRTGYAABH
DVTTRCAYAAB		 Misc
Kulakovskiy et al.(2013)
HLF_MOUSE.H11MO.0.C 		0.826 0.879
HLF
M09937_2.00 		Homo sapiens
ATKRYGTAAY
RTTACRYMAT		 Transfac
Matys et al.(2006)
V$HLF_01 		0.826 0.879
HLF
M04246_2.00 		Homo sapiens
NVTTRCRYAABN
NVTTRYGYAABN		 SELEX
Yin et al.(2017)
HLF_FL_Methyl-HT-SELEX 		0.826 0.879
Tef
M01803_2.00 		Mus musculus
NVTTRYVNNN
NNNBRYAABN		 PBM
Weirauch et al.(2014)
pTH5078 		0.818 0.810
TEF
M02849_2.00 		Homo sapiens
NRTTAYGTAAYN
NRTTACRTAAYN		 SELEX
Jolma et al.(2013)
TEF_1 		0.818 0.810
TEF
M02850_2.00 		Homo sapiens
NVTTAYGTAABN
NVTTACRTAABN		 SELEX
Jolma et al.(2013)
TEF_2 		0.818 0.810
TEF
M04325_2.00 		Homo sapiens
NRTTACGTAAYN
NRTTACGTAAYN		 SELEX
Yin et al.(2017)
TEF_eDBD_HT-SELEX 		0.818 0.810
TEF
M09983_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TEF_05 		0.818 0.810
TEF
M09984_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TEF_06 		0.818 0.810
TEF
M09985_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TEF_Q6 		0.818 0.810
TEF
M09986_2.00 		Homo sapiens
MTKAYGTAAY
RTTACRTMAK		 Transfac
Matys et al.(2006)
V$VBP_01 		0.818 0.810
TEF
M04326_2.00 		Homo sapiens
NRTTACRTAAYN
NRTTAYGTAAYN		 SELEX
Yin et al.(2017)
TEF_eDBD_Methyl-HT-SELEX 		0.818 0.810
Pdp1
M03645_2.00 		Drosophila melanogaster
VTTACGTAAB
VTTACGTAAB		 SELEX
Nitta et al.(2015)
Pdp1_1 		0.787 0.707
Pdp1
M03646_2.00 		Drosophila melanogaster
RTTACGTAAY
RTTACGTAAY		 SELEX
Nitta et al.(2015)
Pdp1_2 		0.787 0.707
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000013347 bZIP 222 279

Links

Other bZIP family TFs
Other Gasterosteus aculeatus TFs

199 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I
ASIL1 Arabidopsis thaliana AT1G54060 D
ASIL2 Arabidopsis thaliana AT3G14180 D
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I
Bo3g184450 Brassica oleracea Bo3g184450 I
Bo6g033010 Brassica oleracea Bo6g033010 I
Bo6g050870 Brassica oleracea Bo6g050870 I
Bo3g065930 Brassica oleracea Bo3g065930 I
Bra014370 Brassica rapa Bra014370 I
Bra037960 Brassica rapa Bra037960 I
PK22475.1 Cannabis sativa PK22475.1 N
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I
Carubv10015798m.g Capsella rubella Carubv10015798m.g I
Carubv10015321m.g Capsella rubella Carubv10015321m.g I
Carubv10009310m.g Capsella rubella Carubv10009310m.g I
Cla015773 Citrullus lanatus Cla015773 I
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I
Cucsa.359990 Cucumis sativus Cucsa.359990 I
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I
GLYMA16G01370 Glycine max GLYMA16G01370 I
GLYMA07G04790 Glycine max GLYMA07G04790 I
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I
MDP0000281471 Malus domestica MDP0000281471 I
MDP0000255104 Malus domestica MDP0000255104 I
cassava34877.m1 Manihot esculenta cassava34877.m1 I
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I
cassava47424.m1 Manihot esculenta cassava47424.m1 I
MTR_8g022290 Medicago truncatula MTR_8g022290 I
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N
Pm013209 Prunus mume Pm013209 I
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I
29727.m000472 Ricinus communis 29727.m000472 I
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I
TCM_029209 Theobroma cacao TCM_029209 I
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N