LIN28B (Takifugu rubripes)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSTRUG00000008428 T164822_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.864 0.864
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.864 0.864
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000021111 CSD 31 103
ENSTRUP00000021112 CSD 1 73

Links

Other CSD family TFs
Other Takifugu rubripes TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.818
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.864
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.864
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.864
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.848
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.864
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.864
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.818
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.924
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.833
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.818
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.848
yakG040859 Bos grunniens yakG040859 I 0.833
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.818
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.818
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.864
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.818
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I 0.727
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.712
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.788
Aan_R002277 Calypte anna Aan_R002277 I 0.788
Aan_R005866 Calypte anna Aan_R005866 I 0.848
Aan_R007025 Calypte anna Aan_R007025 I 0.864
LIN28B Canis familiaris ENSCAFG00000003598 I 0.864
LIN28A Canis familiaris ENSCAFG00000012488 I 0.818
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.879
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.803
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.864
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.818
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.727
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.864
LIN28A Danio rerio ENSDARG00000004328 I 0.803
lin28a Danio rerio ENSDARG00000016999 I 0.848
lin28b Danio rerio ENSDARG00000052511 I 0.924
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.818
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.864
LIN28B Echinops telfairi ENSETEG00000015340 I 0.833
LIN28A Equus caballus ENSECAG00000020267 I 0.818
LIN28B Equus caballus ENSECAG00000020994 I 0.848
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.864
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.727
LIN28B Felis catus ENSFCAG00000005058 I 0.864
LIN28A Felis catus ENSFCAG00000012810 I 0.818
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.848
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.864
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.955
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.773
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.803
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.848
LIN28B Gallus gallus ENSGALG00000026761 I 0.864
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.818
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.985
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.818
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.864
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.864
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.818
LIN28A Homo sapiens ENSG00000131914 I 0.818
LIN28B Homo sapiens ENSG00000187772 D 0.864
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.864
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.818
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.879
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.864
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.879
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.818
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.818
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.864
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.864
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.818
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.864
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.818
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.848
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.864
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.818
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.864
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.864
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.818
Lin28a Mus musculus ENSMUSG00000050966 I 0.818
Lin28b Mus musculus ENSMUSG00000063804 I 0.788
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.818
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.727
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.818
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.818
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.864
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.818
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.864
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.833
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.833
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.833
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.818
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.727
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.818
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.818
LIN28B Oryzias latipes ENSORLG00000012891 I 1.000
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.864
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.818
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.864
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.773
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.818
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.848
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.803
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.864
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.864
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.818
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.864
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.879
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.985
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.864
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.833
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.818
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.864
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.864
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.818
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.788
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.818
LIN28B Sorex araneus ENSSARG00000008374 I 0.864
LIN28A Sus scrofa ENSSSCG00000003557 I 0.818
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.848
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.864
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.864
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.773
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.848
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.818
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.773
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.955
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.818
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.864
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.818
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.864
lin28a.S Xenopus laevis XB-GENE-866059 I 0.848
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.879
lin28a Xenopus tropicalis XB-GENE-491384 I 0.848
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.970
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.848