Alligator_sinensis_CCG005029.1 (Alligator sinensis)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Alligator_sinensis_CCG005029.1 T165285_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		0.985 0.985
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		0.985 0.985
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		0.985 0.985
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		0.985 0.985
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.803 0.803
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG005029.1 CSD 30 99

Links

Other CSD family TFs
Other Alligator sinensis TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I
Afo_R007636 Aptenodytes forsteri Afo_R007636 I
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I
HMG20B Callithrix jacchus ENSCJAG00000003488 I
HMG20A Callithrix jacchus ENSCJAG00000011131 I
Aan_R011684 Calypte anna Aan_R011684 I
HMG20B Canis familiaris ENSCAFG00000019215 I
HMG20B Cavia porcellus ENSCPOG00000010777 I
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I
hmg20b Danio rerio ENSDARG00000042045 I
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I
HMG20B Felis catus ENSFCAG00000026167 I
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I
HMG20B Gallus gallus ENSGALG00000027838 I
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I
Gfo_R007604 Geospiza fortis Gfo_R007604 I
HMG20B Gorilla gorilla ENSGGOG00000014805 I
HMG20A Homo sapiens ENSG00000140382 I
HMG20B Homo sapiens ENSG00000064961 I
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I
HMG20B Loxodonta africana ENSLAFG00000007845 I
LCUP018488 Lucilia cuprina LCUP018488 N
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I
HMG20B Meleagris gallopavo ENSMGAG00000001362 I
HMG20B Monodelphis domestica ENSMODG00000006884 I
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I
Hmg20b Mus musculus ENSMUSG00000020232 D
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I
HMG20B Myotis lucifugus ENSMLUG00000022392 I
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I
hmg20b Oryzias latipes ENSORLG00000004640 I
HMG20B Otolemur garnettii ENSOGAG00000014171 I
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I
Pvit_08123 Pogona vitticeps Pvit_08123 I
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I
HMG20B Procavia capensis ENSPCAG00000010772 I
HMG20A Pteropus vampyrus ENSPVAG00000003321 N
HMG20B Pteropus vampyrus ENSPVAG00000004300 I
Hmg20b Rattus norvegicus ENSRNOG00000020601 I
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I
HMG20B Taeniopygia guttata ENSTGUG00000000169 I
eef2l2 Takifugu rubripes ENSTRUG00000017921 I
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I
Thaps1764 Thalassiosira pseudonana Thaps1764 N
Thaps1871 Thalassiosira pseudonana Thaps1871 N
Thaps10374 Thalassiosira pseudonana Thaps10374 N
D917_01243 Trichinella nativa D917_01243 N
D917_08464 Trichinella nativa D917_08464 N
HMG20B Tursiops truncatus ENSTTRG00000008832 I
hmg20b.S Xenopus laevis XB-GENE-17338323 I
hmg20b.L Xenopus laevis XB-GENE-5809135 I
hmg20b Xenopus tropicalis XB-GENE-5809048 I
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I