Cmyd_10002115 (Chelonia mydas)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Cmyd_10002115 T165299_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		1.000 1.000
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		1.000 1.000
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		1.000 1.000
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		1.000 1.000
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.806 0.806
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.722 0.722
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10002115 CSD 1 40

Links

Other CSD family TFs
Other Chelonia mydas TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g02116 Acanthocheilonema viteae nAv.1.0.1.g02116 N
nAv.1.0.1.g05839 Acanthocheilonema viteae nAv.1.0.1.g05839 N
ACYPI004978 Acyrthosiphon pisum ACYPI004978 N
ACYPI005775 Acyrthosiphon pisum ACYPI005775 I
AMTR_s00023p00232620 Amborella trichopoda AMTR_s00023p00232620 N
ANCCAN_09463 Ancylostoma caninum ANCCAN_09463 N
ANCCEY_15064 Ancylostoma ceylanicum ANCCEY_15064 N
ANCCEY_15918 Ancylostoma ceylanicum ANCCEY_15918 N
ANCDUO_06783 Ancylostoma duodenale ANCDUO_06783 N
ACAC_0000973801 Angiostrongylus cantonensis ACAC_0000973801 N
ASIM_0001613301 Anisakis simplex ASIM_0001613301 N
AALB006415 Anopheles albimanus AALB006415 I
AALB009551 Anopheles albimanus AALB009551 N
AARA006496 Anopheles arabiensis AARA006496 N
AARA010616 Anopheles arabiensis AARA010616 I
AATE016215 Anopheles atroparvus AATE016215 I
ACHR006211 Anopheles christyi ACHR006211 N
ACOM033657 Anopheles coluzzii ACOM033657 N
ACUA004409 Anopheles culicifacies ACUA004409 I
ACUA025632 Anopheles culicifacies ACUA025632 N
ADAC003252 Anopheles darlingi ADAC003252 I
ADAC005840 Anopheles darlingi ADAC005840 N
AEPI009418 Anopheles epiroticus AEPI009418 N
AEPI010254 Anopheles epiroticus AEPI010254 N
AFAF001135 Anopheles farauti AFAF001135 N
AFAF011136 Anopheles farauti AFAF011136 I
AFUN001272 Anopheles funestus AFUN001272 N
AFUN005717 Anopheles funestus AFUN005717 N
AGAP000281 Anopheles gambiae AGAP000281 I
AGAP001099 Anopheles gambiae AGAP001099 N
AMAM014030 Anopheles maculatus AMAM014030 N
AMAM022417 Anopheles maculatus AMAM022417 N
AMEC012325 Anopheles melas AMEC012325 N
AMEC012857 Anopheles melas AMEC012857 I
AMEM006878 Anopheles merus AMEM006878 I
AMIN002364 Anopheles minimus AMIN002364 N
AMIN005634 Anopheles minimus AMIN005634 N
AQUA001810 Anopheles quadriannulatus AQUA001810 N
ASIS016667 Anopheles sinensis ASIS016667 I
ASTEI07799 Anopheles stephensi ASTEI07799 I
ASTEI10740 Anopheles stephensi ASTEI10740 N
GB42921 Apis mellifera GB42921 N
GB43084 Apis mellifera GB43084 I
ALUE_0000699101 Ascaris lumbricoides ALUE_0000699101 N
ASU_00726 Ascaris suum ASU_00726 N
ASU_00939 Ascaris suum ASU_00939 N
ENSAMXG00000016832 Astyanax mexicanus ENSAMXG00000016832 N
ACEP25803 Atta cephalotes ACEP25803 N
BGLB013626 Biomphalaria glabrata BGLB013626 N
BGIBMGA006848 Bombyx mori BGIBMGA006848 I
BGIBMGA010711 Bombyx mori BGIBMGA010711 N
fgenesh2_pg.scaffold_1690000001 Branchiostoma floridae fgenesh2_pg.scaffold_1690000001 N
fgenesh2_pg.scaffold_177000008 Branchiostoma floridae fgenesh2_pg.scaffold_177000008 N
fgenesh2_pg.scaffold_19000069 Branchiostoma floridae fgenesh2_pg.scaffold_19000069 N
Bm2393 Brugia malayi Bm2393 N
Bm4188 Brugia malayi Bm4188 N
Bm7765 Brugia malayi Bm7765 N
Bm9369 Brugia malayi Bm9369 N
BTMF_0001478401 Brugia timori BTMF_0001478401 N
BTMF_0001523401 Brugia timori BTMF_0001523401 N
BXY_0575000 Bursaphelenchus xylophilus BXY_0575000 N
CBN07735 Caenorhabditis brenneri CBN07735 N
CBN15844 Caenorhabditis brenneri CBN15844 N
CBN31697 Caenorhabditis brenneri CBN31697 N
pbrm-1 Caenorhabditis elegans WBGene00007042 N
CJA03316 Caenorhabditis japonica CJA03316 N
CJA30740 Caenorhabditis japonica CJA30740 N
CRE14258 Caenorhabditis remanei CRE14258 N
CRE28315 Caenorhabditis remanei CRE28315 N
Cflo_01038--XP_625055.2_APIME Camponotus floridanus Cflo_01038--XP_625055.2_APIME N
CLEC001918 Cimex lectularius CLEC001918 I
ENSCING00000009516 Ciona intestinalis ENSCING00000009516 N
ENSCSAVG00000009270 Ciona savignyi ENSCSAVG00000009270 N
CGI_10017717 Crassostrea gigas CGI_10017717 I
CpipJ_CPIJ003178 Culex pipiens CpipJ_CPIJ003178 N
CpipJ_CPIJ007271 Culex pipiens CpipJ_CPIJ007271 N
CPIJ003178 Culex quinquefasciatus CPIJ003178 N
CPIJ007271 Culex quinquefasciatus CPIJ007271 N
KGM_14572 Danaus plexippus KGM_14572 I
pbrm1l Danio rerio ENSDARG00000077038 N
tox4b Danio rerio ENSDARG00000100163 I
DAPPUDRAFT_19853 Daphnia pulex DAPPUDRAFT_19853 I
YQE_05481 Dendroctonus ponderosae YQE_05481 N
DICVIV_00270 Dictyocaulus viviparus DICVIV_00270 N
nDi.2.2.2.g01867 Dirofilaria immitis nDi.2.2.2.g01867 N
nDi.2.2.2.g06671 Dirofilaria immitis nDi.2.2.2.g06671 N
nDi.2.2.2.g10298 Dirofilaria immitis nDi.2.2.2.g10298 N
nDi.2.2.2.g11099 Dirofilaria immitis nDi.2.2.2.g11099 N
DME_0000632401 Dracunculus medinensis DME_0000632401 N
GI24041 Drosophila mojavensis FBgn0146764 N
GJ23670 Drosophila virilis FBgn0210767 N
GK13168 Drosophila willistoni FBgn0215177 N
EEL_0000223401 Elaeophora elaphi EEL_0000223401 N
EEL_0000724001 Elaeophora elaphi EEL_0000724001 N
ENSGMOG00000008081 Gadus morhua ENSGMOG00000008081 N
ENSGMOG00000013406 Gadus morhua ENSGMOG00000013406 N
ENSGMOG00000015161 Gadus morhua ENSGMOG00000015161 I
tox2 Gasterosteus aculeatus ENSGACG00000006914 N
tox4a Gasterosteus aculeatus ENSGACG00000014107 I
GPUH_0000021901 Gongylonema pulchrum GPUH_0000021901 N
GPUH_0001659301 Gongylonema pulchrum GPUH_0001659301 N
ENSGGOG00000025016 Gorilla gorilla ENSGGOG00000025016 I
HCOI00076900 Haemonchus contortus HCOI00076900 N
HCOI01215700 Haemonchus contortus HCOI01215700 N
HHAL000823-PA Halyomorpha halys HHAL000823-PA I
Hsal_02676--XP_625055.2_APIME Harpegnathos saltator Hsal_02676--XP_625055.2_APIME N
Hsal_06265--XP_624018.2_APIME Harpegnathos saltator Hsal_06265--XP_624018.2_APIME N
HMEL005034 Heliconius melpomene HMEL005034 I
HMEL006186 Heliconius melpomene HMEL006186 N
HelroG145107 Helobdella robusta HelroG145107 N
ISCW015985 Ixodes scapularis ISCW015985 N
ISCW018867 Ixodes scapularis ISCW018867 I
LDEC007066 Leptinotarsa decemlineata LDEC007066 N
nLs.2.1.2.g04689 Litomosoides sigmodontis nLs.2.1.2.g04689 N
nLs.2.1.2.g07200 Litomosoides sigmodontis nLs.2.1.2.g07200 N
nLs.2.1.2.g08566 Litomosoides sigmodontis nLs.2.1.2.g08566 N
LOAG_11340 Loa loa LOAG_11340 N
LOAG_15875 Loa loa LOAG_15875 N
LOAG_18151 Loa loa LOAG_18151 N
LotgiG109021 Lottia gigantea LotgiG109021 I
LCUP007789 Lucilia cuprina LCUP007789 N
LLOJ004028 Lutzomyia longipalpis LLOJ004028 N
ENSMMUP00000034886 Macaca fascicularis ENSMMUP00000034886 N
ENSMMUG00000014077 Macaca mulatta ENSMMUG00000014077 N
MCINX005468 Melitaea cinxia MCINX005468 I
augustus_masked-nMf.1.1.scaf00485-processed-gene-0.1 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf00485-processed-gene-0.1 N
snap_masked-nMf.1.1.scaf06721-processed-gene-0.5 Meloidogyne floridensis snap_masked-nMf.1.1.scaf06721-processed-gene-0.5 N
MhA1_Contig232.frz3.gene23 Meloidogyne hapla MhA1_Contig232.frz3.gene23 N
Minc06622 Meloidogyne incognita Minc06622 N
MDOA008474 Musca domestica MDOA008474 N
NV10488 Nasonia vitripennis NV10488 I
NECAME_01599 Necator americanus NECAME_01599 N
Ocbimv22012197m.g Octopus bimaculoides Ocbimv22012197m.g I
OESDEN_01314 Oesophagostomum dentatum OESDEN_01314 N
OFLC_0000194401 Onchocerca flexuosa OFLC_0000194401 N
OFLC_0001222801 Onchocerca flexuosa OFLC_0001222801 N
nOo.2.0.1.g03638 Onchocerca ochengi nOo.2.0.1.g03638 N
nOo.2.0.1.g07918 Onchocerca ochengi nOo.2.0.1.g07918 N
nOo.2.0.1.g12207 Onchocerca ochengi nOo.2.0.1.g12207 N
WBGene00236865 Onchocerca volvulus WBGene00236865 N
WBGene00238178 Onchocerca volvulus WBGene00238178 N
WBGene00239172 Onchocerca volvulus WBGene00239172 N
ENSONIG00000000284 Oreochromis niloticus ENSONIG00000000284 N
ENSONIG00000016627 Oreochromis niloticus ENSONIG00000016627 N
tox2 Oryzias latipes ENSORLG00000004818 N
tox4b Oryzias latipes ENSORLG00000008779 N
PEQ_0000212901 Parascaris equorum PEQ_0000212901 N
PTRK_0001310900 Parastrongyloides trichosuri PTRK_0001310900 N
PPAI002532 Phlebotomus papatasi PPAI002532 N
PIIN_05794 Piriformospora indica PIIN_05794 I
ENSPFOG00000002336 Poecilia formosa ENSPFOG00000002336 N
ENSPFOG00000008402 Poecilia formosa ENSPFOG00000008402 N
ENSPFOG00000017300 Poecilia formosa ENSPFOG00000017300 N
scaffold517-EXSNAP2012.7 Pristionchus exspectatus scaffold517-EXSNAP2012.7 N
RSKR_0000607700 Rhabditophanes kr3021 RSKR_0000607700 N
RSKR_0000620800 Rhabditophanes kr3021 RSKR_0000620800 N
RPRC000650 Rhodnius prolixus RPRC000650 I
RPRC014309 Rhodnius prolixus RPRC014309 N
nRc.2.0.1.g42996 Romanomermis culicivorax nRc.2.0.1.g42996 N
Sakowv30024549m.g Saccoglossus kowalevskii Sakowv30024549m.g N
M408DRAFT_328926 Serendipita vermifera M408DRAFT_328926 I
SINV16486 Solenopsis invicta SINV16486 N
TOX2 Sorex araneus ENSSARG00000001080 N
L596_g8243 Steinernema carpocapsae L596_g8243 N
L889_g13125 Steinernema feltiae L889_g13125 N
L893_g19156 Steinernema glaseri L893_g19156 N
L898_g14011 Steinernema monticolum L898_g14011 N
L892_g19322 Steinernema scapterisci L892_g19322 N
SPU_002060 Strongylocentrotus purpuratus SPU_002060 N
SPAL_0001274100 Strongyloides papillosus SPAL_0001274100 N
SSTP_0000878000 Strongyloides stercoralis SSTP_0000878000 N
SSTP_0001127200 Strongyloides stercoralis SSTP_0001127200 N
SVE_0827400 Strongyloides venezuelensis SVE_0827400 N
SVUK_0000363901 Strongylus vulgaris SVUK_0000363901 N
ENSSSCG00000023554 Sus scrofa ENSSSCG00000023554 N
SMUV_0000135001 Syphacia muris SMUV_0000135001 N
ENSTGUG00000003811 Taeniopygia guttata ENSTGUG00000003811 N
ENSTGUG00000014902 Taeniopygia guttata ENSTGUG00000014902 N
tox4b Takifugu rubripes ENSTRUG00000002594 N
tox2 Takifugu rubripes ENSTRUG00000013848 N
TELCIR_16246 Teladorsagia circumcincta TELCIR_16246 N
tetur31g00660 Tetranychus urticae tetur31g00660 N
tetur31g00840 Tetranychus urticae tetur31g00840 N
tetur31g01070 Tetranychus urticae tetur31g01070 N
tox4b Tetraodon nigroviridis ENSTNIG00000003691 N
tox2 Tetraodon nigroviridis ENSTNIG00000005683 N
TCLT_0000189901 Thelazia callipaeda TCLT_0000189901 N
TCNE_0000652201 Toxocara canis TCNE_0000652201 N
TC000618 Tribolium castaneum TC000618 N
TC012723 Tribolium castaneum TC012723 I
D917_02150 Trichinella nativa D917_02150 N
D917_05046 Trichinella nativa D917_05046 N
D917_05048 Trichinella nativa D917_05048 N
EFV52201 Trichinella spiralis EFV52201 N
EFV56090 Trichinella spiralis EFV56090 N
EFV56095 Trichinella spiralis EFV56095 N
EFV61455 Trichinella spiralis EFV61455 N
TMUE_s0009009400 Trichuris muris TMUE_s0009009400 N
TMUE_s0011001600 Trichuris muris TMUE_s0011001600 I
TMUE_s0089001400 Trichuris muris TMUE_s0089001400 N
TMUE_s0227000300 Trichuris muris TMUE_s0227000300 N
D918_03887 Trichuris suis D918_03887 N
D918_05288 Trichuris suis D918_05288 N
D918_06015 Trichuris suis D918_06015 N
D918_09264 Trichuris suis D918_09264 N
TTRE_0000108401 Trichuris trichiura TTRE_0000108401 N
TTRE_0000401801 Trichuris trichiura TTRE_0000401801 I
WUBG_00348 Wuchereria bancrofti WUBG_00348 N
WUBG_03167 Wuchereria bancrofti WUBG_03167 N
WUBG_03914 Wuchereria bancrofti WUBG_03914 N
tox4.S Xenopus laevis XB-GENE-993810 I
XP_002936155 Xenopus tropicalis XP_002936155 N
ENSXMAG00000000362 Xiphophorus maculatus ENSXMAG00000000362 I
ENSXMAG00000016160 Xiphophorus maculatus ENSXMAG00000016160 N
ENSXMAG00000016763 Xiphophorus maculatus ENSXMAG00000016763 N
L798_00437 Zootermopsis nevadensis L798_00437 N