Gfo_R012200 (Geospiza fortis)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Gfo_R012200 T165317_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.970 0.970
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.970 0.970
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R012200 CSD 27 99

Links

Other CSD family TFs
Other Geospiza fortis TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL80 Arabidopsis thaliana AT5G48670 D 0.000
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I 0.000
Bo5g145000 Brassica oleracea Bo5g145000 I 0.000
Bo9g078450 Brassica oleracea Bo9g078450 I 0.000
Bra018490 Brassica rapa Bra018490 I 0.000
Bra029469 Brassica rapa Bra029469 I 0.000
Bra041022 Brassica rapa Bra041022 I 0.000
Cagra.1772s0003 Capsella grandiflora Cagra.1772s0003 I 0.000
Carubv10014232m.g Capsella rubella Carubv10014232m.g I 0.000
evm.TU.contig_28448.4 Carica papaya evm.TU.contig_28448.4 I 0.000
evm.TU.contig_40499.2 Carica papaya evm.TU.contig_40499.2 I 0.000
Ca_13275 Cicer arietinum Ca_13275 I 0.000
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I 0.000
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I 0.000
Thhalv10024162m.g Eutrema salsugineum Thhalv10024162m.g I 0.000
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.000
Thhalv10019833m.g Eutrema salsugineum Thhalv10019833m.g I 0.000
Thhalv10019810m.g Eutrema salsugineum Thhalv10019810m.g I 0.000
Thhalv10019758m.g Eutrema salsugineum Thhalv10019758m.g N 0.000
Thhalv10019751m.g Eutrema salsugineum Thhalv10019751m.g I 0.000
Thhalv10019731m.g Eutrema salsugineum Thhalv10019731m.g I 0.000
Thhalv10019681m.g Eutrema salsugineum Thhalv10019681m.g I 0.000
Thhalv10019667m.g Eutrema salsugineum Thhalv10019667m.g N 0.000
Thhalv10019579m.g Eutrema salsugineum Thhalv10019579m.g I 0.000
Thhalv10019516m.g Eutrema salsugineum Thhalv10019516m.g I 0.000
Thhalv10019451m.g Eutrema salsugineum Thhalv10019451m.g I 0.000
Thhalv10019449m.g Eutrema salsugineum Thhalv10019449m.g I 0.000
Thhalv10012000m.g Eutrema salsugineum Thhalv10012000m.g I 0.000
Thhalv10002996m.g Eutrema salsugineum Thhalv10002996m.g I 0.000
Thhalv10002956m.g Eutrema salsugineum Thhalv10002956m.g I 0.000
Thhalv10002789m.g Eutrema salsugineum Thhalv10002789m.g I 0.000
Thhalv10002353m.g Eutrema salsugineum Thhalv10002353m.g I 0.000
Thhalv10002352m.g Eutrema salsugineum Thhalv10002352m.g I 0.000
Thhalv10002349m.g Eutrema salsugineum Thhalv10002349m.g I 0.000
Thhalv10002346m.g Eutrema salsugineum Thhalv10002346m.g I 0.000
MDP0000925348 Malus domestica MDP0000925348 I 0.000
MTR_3g065100 Medicago truncatula MTR_3g065100 I 0.000
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.000
TCM_026842 Theobroma cacao TCM_026842 I 0.000