Cla018449 (Citrullus lanatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cla018449 T225618_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.830 0.673
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.638 0.551
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.602 0.408
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.602 0.408
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.602 0.408
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.602 0.408
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla018449 Homeodomain 275 326

Links

Other Homeodomain family TFs
Other Citrullus lanatus TFs

1004 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ASIM_0001132301 Anisakis simplex ASIM_0001132301 N 0.000
ASIS002444 Anopheles sinensis ASIS002444 N 0.000
ARB_07320 Arthroderma benhamiae ARB_07320 N 0.000
BGIBMGA006156 Bombyx mori BGIBMGA006156 N 0.000
Bo6g005800 Brassica oleracea Bo6g005800 N 0.000
Bra012832 Brassica rapa Bra012832 N 0.000
AWRI1499_2837 Brettanomyces bruxellensis AWRI1499_2837 N 0.000
Cla010647 Citrullus lanatus Cla010647 N 0.000
UCREL1_5722 Eutypa lata UCREL1_5722 N 0.000
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N 0.000
GPLIN_000170600 Globodera pallida GPLIN_000170600 N 0.000
CMQ_7998 Grosmannia clavigera CMQ_7998 N 0.000
HelroG178674 Helobdella robusta HelroG178674 N 0.000
estExt_Genewise1.C_120062 Heterobasidion annosum estExt_Genewise1.C_120062 N 0.000
HETIRDRAFT_460226 Heterobasidion irregulare HETIRDRAFT_460226 N 0.000
Hba_11463 Heterorhabditis bacteriophora Hba_11463 N 0.000
JAAARDRAFT_460099 Jaapia argillacea JAAARDRAFT_460099 N 0.000
Kwal_9519 Kluyveromyces waltii Kwal_9519 N 0.000
PAS_chr3_1149 Komagataella pastoris PAS_chr3_1149 N 0.000
KUCA_T00004799001 Kuraishia capsulata KUCA_T00004799001 N 0.000
SAKL0C03872g Lachancea kluyveri SAKL0C03872g N 0.000
SAKL0C03916g Lachancea kluyveri SAKL0C03916g N 0.000
SAKL0C10648g Lachancea kluyveri SAKL0C10648g N 0.000
SAKL0D09922g Lachancea kluyveri SAKL0D09922g N 0.000
SAKL0H00726g Lachancea kluyveri SAKL0H00726g N 0.000
LALA0_S10e00254g Lachancea lanzarotensis LALA0_S10e00254g N 0.000
Lus10035991.g Linum usitatissimum Lus10035991.g N 0.000
Lus10027787.g Linum usitatissimum Lus10027787.g N 0.000
Lus10016695.g Linum usitatissimum Lus10016695.g N 0.000
Lus10013219.g Linum usitatissimum Lus10013219.g N 0.000
MDP0000699531 Malus domestica MDP0000699531 N 0.000
MAC_03708 Metarhizium acridum MAC_03708 N 0.000
MAM_02299 Metarhizium album MAM_02299 N 0.000
MAM_05902 Metarhizium album MAM_05902 N 0.000
MBR_01289 Metarhizium brunneum MBR_01289 N 0.000
MAJ_01270 Metarhizium majus MAJ_01270 N 0.000
X797_001779 Metarhizium robertsii X797_001779 N 0.000
MVLG_01553 Microbotryum violaceum MVLG_01553 N 0.000
MPER_12197 Moniliophthora perniciosa MPER_12197 N 0.000
Moror_8439 Moniliophthora roreri Moror_8439 N 0.000
MYCTH_2294733 Myceliophthora thermophila MYCTH_2294733 N 0.000
NCLIV_023590 Neospora caninum NCLIV_023590 N 0.000
HPODL_02662 Ogataea parapolymorpha HPODL_02662 N 0.000
OLONG_009629 Oryza longistaminata OLONG_009629 N 0.000
Phatr3_J38097 Phaeodactylum tricornutum Phatr3_J38097 N 0.000
Phatr3_J33840 Phaeodactylum tricornutum Phatr3_J33840 N 0.000
XP_002492281.1 Pichia pastoris XP_002492281.1 N 0.000
GLOINDRAFT_9339 Rhizophagus irregularis GLOINDRAFT_9339 N 0.000
RHTO_04537 Rhodosporidium toruloides RHTO_04537 N 0.000
SCHCODRAFT_110960 Schizophyllum commune SCHCODRAFT_110960 N 0.000
PGSC0003DMG400001413 Solanum tuberosum PGSC0003DMG400001413 N 0.000
sr12520 Sporisorium reilianum sr12520 N 0.000
fgenesh1_pg.C_scaffold_11000089 Sporobolomyces roseus fgenesh1_pg.C_scaffold_11000089 N 0.000
S40285_05706 Stachybotrys chlorohalonata S40285_05706 N 0.000
TSTA_110260 Talaromyces stipitatus TSTA_110260 N 0.000
Thaps12024 Thalassiosira pseudonana Thaps12024 N 0.000
K437DRAFT_266676 Tilletiaria anomala K437DRAFT_266676 N 0.000
K437DRAFT_66818 Tilletiaria anomala K437DRAFT_66818 N 0.000
estExt_fgeneshTM_pg.C_10542 Tremella mesenterica estExt_fgeneshTM_pg.C_10542 N 0.000
TRIVIDRAFT_119706 Trichoderma virens TRIVIDRAFT_119706 N 0.000
TRV_02051 Trichophyton verrucosum TRV_02051 N 0.000
A1Q1_02593 Trichosporon asahii A1Q1_02593 N 0.000
M407DRAFT_45069 Tulasnella calospora M407DRAFT_45069 N 0.000
TCF7L2 Tursiops truncatus ENSTTRG00000002360 N 0.000
BN7_5943 Wickerhamomyces ciferrii BN7_5943 N 0.000