Pavir.Eb00113 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Eb00113 T229251_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.768 0.842
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.768 0.842
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.768 0.842
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.764 0.842
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.764 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb00113.1.p Homeodomain 13 73

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

329 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00070p00188780 Amborella trichopoda AMTR_s00070p00188780 I
AMTR_s00041p00193340 Amborella trichopoda AMTR_s00041p00193340 I
bHLH121 Arabidopsis lyrata fgenesh2_kg.3__2204__AT3G19860.1 I
BHLH121 Arabidopsis thaliana AT3G19860 I
Bostr.19424s0675 Boechera stricta Bostr.19424s0675 I
BRADI3G11520 Brachypodium distachyon BRADI3G11520 I
Bo1g112310 Brassica oleracea Bo1g112310 I
Bra038236 Brassica rapa Bra038236 I
PK18401.1 Cannabis sativa PK18401.1 D
Cagra.0316s0082 Capsella grandiflora Cagra.0316s0082 I
evm.TU.supercontig_6.255 Carica papaya evm.TU.supercontig_6.255 I
evm.TU.supercontig_17.155 Carica papaya evm.TU.supercontig_17.155 I
Cla014511 Citrullus lanatus Cla014511 I
Cla001685 Citrullus lanatus Cla001685 I
Ciclev10028783m.g Citrus clementina Ciclev10028783m.g I
orange1.1g022288m.g Citrus sinensis orange1.1g022288m.g I
Cucsa.043580 Cucumis sativus Cucsa.043580 I
Cucsa.169240 Cucumis sativus Cucsa.169240 I
Eucgr.G01757 Eucalyptus grandis Eucgr.G01757 I
Eucgr.I02346 Eucalyptus grandis Eucgr.I02346 I
Thhalv10023630m.g Eutrema salsugineum Thhalv10023630m.g I
Thhalv10021271m.g Eutrema salsugineum Thhalv10021271m.g I
gene14608-v1.0-hybrid Fragaria vesca gene14608-v1.0-hybrid I
gene07391-v1.0-hybrid Fragaria vesca gene07391-v1.0-hybrid I
GLYMA07G26910 Glycine max GLYMA07G26910 I
GLYMA12G02740 Glycine max GLYMA12G02740 I
GLYMA08G15740 Glycine max GLYMA08G15740 I
GLYMA15G29630 Glycine max GLYMA15G29630 I
Gorai.005G252200 Gossypium raimondii Gorai.005G252200 I
LPERR02G12290 Leersia perrieri LPERR02G12290 I
Lus10041908.g Linum usitatissimum Lus10041908.g I
MDP0000275844 Malus domestica MDP0000275844 I
cassava24936.valid.m1 Manihot esculenta cassava24936.valid.m1 I
cassava24935.valid.m1 Manihot esculenta cassava24935.valid.m1 I
MTR_4g075480 Medicago truncatula MTR_4g075480 I
mgf017107m Mimulus guttatus mgf017107m I
GSMUA_Achr11G16630_001 Musa acuminata GSMUA_Achr11G16630_001 I
OB0197G10010 Oryza brachyantha OB0197G10010 I
BGIOSGA008112 Oryza indica BGIOSGA008112 I
OPUNC02G13570 Oryza punctata OPUNC02G13570 I
OS02G0433600 Oryza sativa OS02G0433600 I
Pavir.Ab01730 Panicum virgatum Pavir.Ab01730 I
Pavir.Aa02015 Panicum virgatum Pavir.Aa02015 I
estExt_fgenesh1_pg.C_1360017 Physcomitrella patens estExt_fgenesh1_pg.C_1360017 I
fgenesh1_pg.scaffold_31000088 Physcomitrella patens fgenesh1_pg.scaffold_31000088 I
POPTR_0004s17540 Populus trichocarpa POPTR_0004s17540 I
POPTR_0005s11550 Populus trichocarpa POPTR_0005s11550 I
POPTR_0009s13220 Populus trichocarpa POPTR_0009s13220 I
Pm026758 Prunus mume Pm026758 I
Pm021043 Prunus mume Pm021043 I
PRUPE_ppa008347mg Prunus persica PRUPE_ppa008347mg I
PRUPE_ppa008596mg Prunus persica PRUPE_ppa008596mg I
29711.m000322 Ricinus communis 29711.m000322 I
29830.m001386 Ricinus communis 29830.m001386 I
SapurV1A.0117s0370 Salix purpurea SapurV1A.0117s0370 I
SapurV1A.1150s0140 Salix purpurea SapurV1A.1150s0140 I
Si017804m.g Setaria italica Si017804m.g I
Solyc01g111130.2 Solanum lycopersicum Solyc01g111130.2 I
PGSC0003DMG400001594 Solanum tuberosum PGSC0003DMG400001594 I
Sb03g028030 Sorghum bicolor Sb03g028030 I
TCM_000204 Theobroma cacao TCM_000204 I
TCM_006692 Theobroma cacao TCM_006692 I
bHLH121 Vitis vinifera VIT_03s0038g01790 I
bHLH11 Vitis vinifera VIT_04s0023g03430 I
GRMZM2G114444 Zea mays GRMZM2G114444 I