SNAPOd2T00025245001 (Oikopleura dioica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SNAPOd2T00025245001 T230387_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.762 0.642
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.762 0.642
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.762 0.642
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.762 0.642
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.751 0.660
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.751 0.660
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.751 0.660
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.751 0.660
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.751 0.660
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.751 0.623
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.751 0.623
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.751 0.623
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.751 0.623
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.751 0.623
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.652 0.642
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.652 0.642
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.652 0.642
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.652 0.642
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.652 0.642
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.652 0.642
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.652 0.642
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.652 0.642
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.652 0.642
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.652 0.642
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.652 0.642
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.652 0.642
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.652 0.642
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.652 0.642
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.652 0.642
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.652 0.642
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.652 0.642
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.652 0.642
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.652 0.642
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.652 0.642
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.652 0.642
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.652 0.642
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.652 0.642
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.652 0.642
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.652 0.642
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.652 0.642
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.623 0.623
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00025245001 Homeodomain 653 709

Links

Other Homeodomain family TFs
Other Oikopleura dioica TFs

532 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_053_00136 Aquilegia coerulea Aquca_053_00136 N
Aquca_030_00101 Aquilegia coerulea Aquca_030_00101 N
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N
SIGF Arabidopsis thaliana AT2G36990 N
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N
Bo4g186560 Brassica oleracea Bo4g186560 N
Bra017213 Brassica rapa Bra017213 N
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N
Carubv10022939m.g Capsella rubella Carubv10022939m.g N
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N
Ca_12052 Cicer arietinum Ca_12052 N
Cla018594 Citrullus lanatus Cla018594 N
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N
Cucsa.124610 Cucumis sativus Cucsa.124610 N
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N
GLYMA19G36710 Glycine max GLYMA19G36710 N
GLYMA13G20700 Glycine max GLYMA13G20700 N
GLYMA10G06500 Glycine max GLYMA10G06500 N
GLYMA05G22730 Glycine max GLYMA05G22730 N
GLYMA03G33970 Glycine max GLYMA03G33970 N
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N
Gorai.006G165200 Gossypium raimondii Gorai.006G165200 N
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N
cassava35219.m1 Manihot esculenta cassava35219.m1 N
MTR_7g101840 Medicago truncatula MTR_7g101840 N
mgf007606m Mimulus guttatus mgf007606m N
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N
PDK_20s1626471g002 Phoenix dactylifera PDK_20s1626471g002 N
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N
Pm030137 Prunus mume Pm030137 N
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N
30078.m002307 Ricinus communis 30078.m002307 N
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N
TCM_022198 Theobroma cacao TCM_022198 N
SIGF Vitis vinifera VIT_08s0040g01560 N