nRc.2.0.1.g34594 (Romanomermis culicivorax)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 nRc.2.0.1.g34594 T235551_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.705 0.435
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.705 0.435
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.705 0.435
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.705 0.435
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.705 0.435
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.705 0.435
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.705 0.435
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.705 0.435
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.705 0.435
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.697 0.522
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.697 0.522
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.697 0.522
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t34594-RA Homeodomain 128 173

Links

Other Homeodomain family TFs
Other Romanomermis culicivorax TFs

1224 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_001_00822 Aquilegia coerulea Aquca_001_00822 I
HY5 Arabidopsis lyrata scaffold_601144.1 I
HY5 Arabidopsis thaliana AT5G11260 D
Bostr.23997s0021 Boechera stricta Bostr.23997s0021 I
Bostr.29827s0269 Boechera stricta Bostr.29827s0269 I
BRADI1G36750 Brachypodium distachyon BRADI1G36750 I
BRADI3G07540 Brachypodium distachyon BRADI3G07540 I
Bo2g010330 Brassica oleracea Bo2g010330 I
Bo9g171430 Brassica oleracea Bo9g171430 I
Bra008976 Brassica rapa Bra008976 I
Bra023317 Brassica rapa Bra023317 I
PK17235.1 Cannabis sativa PK17235.1 I
Cagra.7526s0027 Capsella grandiflora Cagra.7526s0027 I
Carubv10003520m.g Capsella rubella Carubv10003520m.g I
evm.TU.supercontig_115.9 Carica papaya evm.TU.supercontig_115.9 I
Ca_21380 Cicer arietinum Ca_21380 I
Cla021273 Citrullus lanatus Cla021273 I
Cla022656 Citrullus lanatus Cla022656 I
Ciclev10009720m.g Citrus clementina Ciclev10009720m.g I
orange1.1g030957m.g Citrus sinensis orange1.1g030957m.g I
Cucsa.162360 Cucumis sativus Cucsa.162360 I
Cucsa.310450 Cucumis sativus Cucsa.310450 I
Eucgr.C02802 Eucalyptus grandis Eucgr.C02802 I
Thhalv10004860m.g Eutrema salsugineum Thhalv10004860m.g I
Thhalv10014851m.g Eutrema salsugineum Thhalv10014851m.g I
gene11666-v1.0-hybrid Fragaria vesca gene11666-v1.0-hybrid I
Q39895_SOYBN Glycine max Q39895_SOYBN D
GLYMA08G41450 Glycine max GLYMA08G41450 I
GLYMA18G14750 Glycine max GLYMA18G14750 I
Gorai.004G274100 Gossypium raimondii Gorai.004G274100 I
LPERR06G16860 Leersia perrieri LPERR06G16860 I
Lus10002900.g Linum usitatissimum Lus10002900.g I
Lus10002028.g Linum usitatissimum Lus10002028.g I
LjB12O06.40.nc Lotus japonicus LjB12O06.40.nc I
chr6.LjT14A08.90.nd Lotus japonicus chr6.LjT14A08.90.nd I
MDP0000264514 Malus domestica MDP0000264514 I
MDP0000586302 Malus domestica MDP0000586302 I
cassava8163.valid.m1 Manihot esculenta cassava8163.valid.m1 I
MTR_3g436010 Medicago truncatula MTR_3g436010 I
SAR_estExt_Genewise1Plus.C_20674 Micromonas pusilla SAR_estExt_Genewise1Plus.C_20674 I
EuGene.0200010492 Micromonas sp RCC299 EuGene.0200010492 I
mgf014305m Mimulus guttatus mgf014305m I
mgf012104m Mimulus guttatus mgf012104m I
GSMUA_Achr7G09980_001 Musa acuminata GSMUA_Achr7G09980_001 I
GSMUA_Achr6G05280_001 Musa acuminata GSMUA_Achr6G05280_001 I
GSMUA_Achr5G06060_001 Musa acuminata GSMUA_Achr5G06060_001 I
GSMUA_Achr10G27050_001 Musa acuminata GSMUA_Achr10G27050_001 I
GSMUA_Achr9G28570_001 Musa acuminata GSMUA_Achr9G28570_001 I
OBART06G20230 Oryza barthii OBART06G20230 I
OBART02G07840 Oryza barthii OBART02G07840 I
OB02G17160 Oryza brachyantha OB02G17160 I
ORGLA02G0074000 Oryza glaberrima ORGLA02G0074000 I
OGLUM06G21280 Oryza glumaepatula OGLUM06G21280 I
OGLUM02G07920 Oryza glumaepatula OGLUM02G07920 I
BGIOSGA002286 Oryza indica BGIOSGA002286 I
BGIOSGA006916 Oryza indica BGIOSGA006916 I
BGIOSGA023213 Oryza indica BGIOSGA023213 I
OMERI06G20830 Oryza meridionalis OMERI06G20830 I
ONIVA02G09400 Oryza nivara ONIVA02G09400 I
OPUNC02G07060 Oryza punctata OPUNC02G07060 I
OPUNC06G18440 Oryza punctata OPUNC06G18440 I
ORUFI03G26360 Oryza rufipogon ORUFI03G26360 I
OS02G0203000 Oryza sativa OS02G0203000 I
Pavir.Db01231 Panicum virgatum Pavir.Db01231 I
Pavir.Da00549 Panicum virgatum Pavir.Da00549 I
Pavir.Aa02966 Panicum virgatum Pavir.Aa02966 I
POPTR_0018s01530 Populus trichocarpa POPTR_0018s01530 I
POPTR_0006s26800 Populus trichocarpa POPTR_0006s26800 I
PRUPE_ppa012064mg Prunus persica PRUPE_ppa012064mg I
29848.m004650 Ricinus communis 29848.m004650 I
SapurV1A.0073s0400 Salix purpurea SapurV1A.0073s0400 I
SapurV1A.0043s0530 Salix purpurea SapurV1A.0043s0530 I
SapurV1A.3812s0010 Salix purpurea SapurV1A.3812s0010 I
SELMODRAFT_173274 Selaginella moellendorffii SELMODRAFT_173274 I
SELMODRAFT_440988 Selaginella moellendorffii SELMODRAFT_440988 I
SELMODRAFT_451326 Selaginella moellendorffii SELMODRAFT_451326 I
SELMODRAFT_451330 Selaginella moellendorffii SELMODRAFT_451330 I
Si018524m.g Setaria italica Si018524m.g I
Solyc08g061130.2 Solanum lycopersicum Solyc08g061130.2 I
PGSC0003DMG401020784 Solanum tuberosum PGSC0003DMG401020784 I
Sb04g007060 Sorghum bicolor Sb04g007060 I
Sb10g023420 Sorghum bicolor Sb10g023420 I
TCM_038392 Theobroma cacao TCM_038392 I
Traes_6BS_993CBD840 Triticum aestivum Traes_6BS_993CBD840 I
Traes_7DL_68B814464 Triticum aestivum Traes_7DL_68B814464 I
HY5 Vitis vinifera VIT_04s0008g05210 I
GRMZM2G140355 Zea mays GRMZM2G140355 I
GRMZM2G137046 Zea mays GRMZM2G137046 I