CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OGLUM01G40780 *(Oryza glumaepatula)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	OGLUM01G40780	T275651_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MYB3R5 M07116_2.00	Arabidopsis thaliana	NWWWWNTDRCCGTTR	YAACGGYHANWWWWN	Dap-seq OMalley et al.(2016) MYB3R5_col_a	0.746	0.879
PK12011.1 M01279_2.00	Cannabis sativa	HAACGGHHNN	NNDDCCGTTD	PBM Lambert et al.(2019) pTH11423	0.724	0.793
PC-MYB1 M07110_2.00	Arabidopsis thaliana	NDWWNTDRCCGTTRN	NYAACGGYHANWWHN	Dap-seq OMalley et al.(2016) MYB3R1_col_a	0.721	0.779
PC-MYB1 M07111_2.00	Arabidopsis thaliana	DWHNTDRCCGTTR	YAACGGYHANDWH	Dap-seq OMalley et al.(2016) MYB3R1_colamp_a	0.721	0.779
Q948S5_TOBAC M11074_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MYBA2_01	0.701	0.779
MYB3R4 M07125_2.00	Arabidopsis thaliana	NDWWNTDRCCGTTRN	NYAACGGYHANWWHN	Dap-seq OMalley et al.(2016) MYB3R4_col_a	0.667	0.736
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OGLUM01G40780.1	Myb	67	113	KGGWTPEEDETLRKAVEAYKGRNWKKIAECFPYRTEVQCLHRWQKVL
OGLUM01G40780.1	Myb	119	165	KGPWTQEEDDQIIDLVKKYGPTKWSVIAKALPGRIGKQCRERWHNHL
OGLUM01G40780.1	Myb	171	216	KDAWTTEEEQALINAHRIYGNKWAEIAKVLPGRTDNSIKNHWNSSL
OGLUM01G40780.2	Myb	67	105	KGGWTPEEDETLRKAVEAYKGRNWKKIEQRYNACIDGKR
OGLUM01G40780.2	Myb	112	153	SKEDDQIIDLVKKYGPTKWSVIAKALPGRIGKQCRERWHNHL
OGLUM01G40780.2	Myb	159	204	KDAWTTEEEQALINAHRIYGNKWAEIAKVLPGRTDNSIKNHWNSSL

Links
Other Myb/SANT family TFs
Other *Oryza glumaepatula* TFs