Cla013553 (Citrullus lanatus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cla013553 T283239_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK27213.1
M01284_2.00 		Cannabis sativa
NHWATCNNNN
NNNNGATWDN		 PBM
Lambert et al.(2019)
pTH10196 		0.725 0.851
PK27213.1
M02356_2.00 		Cannabis sativa
NHHATCNNNN
NNNNGATDDN		 PBM
Weirauch et al.(2014)
pTH9600 		0.725 0.851
AT5G58900
M07146_2.00 		Arabidopsis thaliana
HHWWYCTTATCYWHW
WDWRGATAAGRWWDD		 Dap-seq
OMalley et al.(2016)
At5g58900_col_a 		0.701 0.851
AT5G58900
M07147_2.00 		Arabidopsis thaliana
HWYMTTATCHWNWWH
DWWNWDGATAAKRWD		 Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a 		0.701 0.851
AT2G38090
M07055_2.00 		Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN
NVNRDWNWRGATAARNWTVDD		 Dap-seq
OMalley et al.(2016)
At2g38090_col_a 		0.690 0.809
AT3G11280
M01075_2.00 		Arabidopsis thaliana
NNTTATCNNN
NNNGATAANN		 PBM
Sullivan et al.(2014)
pTH7245 		0.687 0.777
AT3G11280
M07074_2.00 		Arabidopsis thaliana
DWDWDGATAAKRWW
WWYMTTATCHWHWH		 Dap-seq
OMalley et al.(2016)
At3g11280_col_a 		0.687 0.777
AT3G11280
M07075_2.00 		Arabidopsis thaliana
NNWNNDGATAAGRWHDNN
NNHDWYCTTATCHNNWNN		 Dap-seq
OMalley et al.(2016)
At3g11280_colamp_a 		0.687 0.777
PK27693.1
M01285_2.00 		Cannabis sativa
NNYTATCBNN
NNVGATARNN		 PBM
Lambert et al.(2019)
pTH11302 		0.679 0.819
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla013553 Myb 133 180

Links

Other Myb/SANT family TFs
Other Citrullus lanatus TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00169630 Amborella trichopoda AMTR_s00007p00169630 I
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I
Aquca_007_00580 Aquilegia coerulea Aquca_007_00580 I
Aquca_009_00809 Aquilegia coerulea Aquca_009_00809 I
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I
MYB25 Arabidopsis lyrata Al_scaffold_0004_2572 I
MYB109 Arabidopsis lyrata fgenesh2_kg.5__1999__AT3G55730.1 I
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I
MYB25 Arabidopsis thaliana AT2G39880 I
MYB1 Arabidopsis thaliana AT3G09230 D
MYB109 Arabidopsis thaliana AT3G55730 I
Bostr.20505s0177 Boechera stricta Bostr.20505s0177 I
Bostr.22252s0145 Boechera stricta Bostr.22252s0145 I
Bostr.23794s0078 Boechera stricta Bostr.23794s0078 I
BRADI2G55040 Brachypodium distachyon BRADI2G55040 I
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I
Bo3g062160 Brassica oleracea Bo3g062160 I
Bo4g025810 Brassica oleracea Bo4g025810 I
Bo8g090160 Brassica oleracea Bo8g090160 I
Bra005006 Brassica rapa Bra005006 I
Bra007186 Brassica rapa Bra007186 I
PK01153.1 Cannabis sativa PK01153.1 I
PK07741.1 Cannabis sativa PK07741.1 D
PK12959.1 Cannabis sativa PK12959.1 I
PK16550.1 Cannabis sativa PK16550.1 I
PK17282.1 Cannabis sativa PK17282.1 I
PK29071.1 Cannabis sativa PK29071.1 I
Cagra.0003s0013 Capsella grandiflora Cagra.0003s0013 I
Cagra.10445s0001 Capsella grandiflora Cagra.10445s0001 I
Cagra.2515s0014 Capsella grandiflora Cagra.2515s0014 I
Carubv10013882m.g Capsella rubella Carubv10013882m.g I
Carubv10017397m.g Capsella rubella Carubv10017397m.g I
Carubv10023414m.g Capsella rubella Carubv10023414m.g I
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I
evm.TU.supercontig_21.145 Carica papaya evm.TU.supercontig_21.145 I
evm.TU.supercontig_56.79 Carica papaya evm.TU.supercontig_56.79 I
Ca_12468 Cicer arietinum Ca_12468 I
Cla004431 Citrullus lanatus Cla004431 I
Cla013306 Citrullus lanatus Cla013306 I
Cla018417 Citrullus lanatus Cla018417 I
Cla020946 Citrullus lanatus Cla020946 I
Cla022889 Citrullus lanatus Cla022889 I
Ciclev10001979m.g Citrus clementina Ciclev10001979m.g I
Ciclev10012003m.g Citrus clementina Ciclev10012003m.g I
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I
Ciclev10032317m.g Citrus clementina Ciclev10032317m.g I
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I
orange1.1g017566m.g Citrus sinensis orange1.1g017566m.g I
orange1.1g022144m.g Citrus sinensis orange1.1g022144m.g I
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I
orange1.1g046570m.g Citrus sinensis orange1.1g046570m.g I
Cucsa.066910 Cucumis sativus Cucsa.066910 I
Cucsa.232630 Cucumis sativus Cucsa.232630 I
Cucsa.244650 Cucumis sativus Cucsa.244650 I
Cucsa.352560 Cucumis sativus Cucsa.352560 I
Cucsa.368410 Cucumis sativus Cucsa.368410 I
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I
Eucgr.F02372 Eucalyptus grandis Eucgr.F02372 I
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I
Eucgr.K03010 Eucalyptus grandis Eucgr.K03010 I
Thhalv10010431m.g Eutrema salsugineum Thhalv10010431m.g I
Thhalv10016794m.g Eutrema salsugineum Thhalv10016794m.g I
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I
gene18756-v1.0-hybrid Fragaria vesca gene18756-v1.0-hybrid I
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I
gene21001-v1.0-hybrid Fragaria vesca gene21001-v1.0-hybrid I
gene26289-v1.0-hybrid Fragaria vesca gene26289-v1.0-hybrid I
GLYMA01G26650 Glycine max GLYMA01G26650 I
GLYMA02G42030 Glycine max GLYMA02G42030 I
GLYMA02G43280 Glycine max GLYMA02G43280 I
GLYMA03G15810 Glycine max GLYMA03G15810 I
GLYMA14G06320 Glycine max GLYMA14G06320 I
GLYMA14G06870 Glycine max GLYMA14G06870 I
Gorai.006G179700 Gossypium raimondii Gorai.006G179700 I
Gorai.010G016800 Gossypium raimondii Gorai.010G016800 I
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I
Gorai.012G078200 Gossypium raimondii Gorai.012G078200 I
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I
MLOC_10322 Hordeum vulgare MLOC_10322 I
MLOC_64817 Hordeum vulgare MLOC_64817 I
MLOC_7426 Hordeum vulgare MLOC_7426 I
LPERR01G32110 Leersia perrieri LPERR01G32110 I
LPERR02G05810 Leersia perrieri LPERR02G05810 I
LPERR09G00910 Leersia perrieri LPERR09G00910 I
Lus10021762.g Linum usitatissimum Lus10021762.g I
Lus10028250.g Linum usitatissimum Lus10028250.g I
Lus10028979.g Linum usitatissimum Lus10028979.g I
Lus10040239.g Linum usitatissimum Lus10040239.g I
Lus10040940.g Linum usitatissimum Lus10040940.g I
chr2.CM0002.110.nc Lotus japonicus chr2.CM0002.110.nc I
chr2.LjT13M01.180.nd Lotus japonicus chr2.LjT13M01.180.nd I
MDP0000284922 Malus domestica MDP0000284922 I
MDP0000319124 Malus domestica MDP0000319124 I
MDP0000463846 Malus domestica MDP0000463846 I
MDP0000478512 Malus domestica MDP0000478512 I
MDP0000807341 Malus domestica MDP0000807341 I
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I
cassava41257.m1 Manihot esculenta cassava41257.m1 I
cassava47374.m1 Manihot esculenta cassava47374.m1 I
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I
cassava8939.m1 Manihot esculenta cassava8939.m1 I
MTR_3g101290 Medicago truncatula MTR_3g101290 I
MTR_4g019370 Medicago truncatula MTR_4g019370 I
MTR_5g082910 Medicago truncatula MTR_5g082910 I
MTR_6g015455 Medicago truncatula MTR_6g015455 I
mgf006151m Mimulus guttatus mgf006151m I
mgf015566m Mimulus guttatus mgf015566m I
mgf018580m Mimulus guttatus mgf018580m I
mgf020432m Mimulus guttatus mgf020432m I
mgf025567m Mimulus guttatus mgf025567m I
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I
GSMUA_Achr9G03720_001 Musa acuminata GSMUA_Achr9G03720_001 I
OBART09G00310 Oryza barthii OBART09G00310 I
OB01G46120 Oryza brachyantha OB01G46120 I
OB09G10200 Oryza brachyantha OB09G10200 I
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I
BGIOSGA030245 Oryza indica BGIOSGA030245 I
OMERI02G07700 Oryza meridionalis OMERI02G07700 I
OMERI08G05160 Oryza meridionalis OMERI08G05160 I
ONIVA02G08210 Oryza nivara ONIVA02G08210 I
ONIVA09G00250 Oryza nivara ONIVA09G00250 I
OPUNC02G05820 Oryza punctata OPUNC02G05820 I
OPUNC12G06260 Oryza punctata OPUNC12G06260 I
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I
OS02G0187700 Oryza sativa OS02G0187700 D
OS09G0106700 Oryza sativa OS09G0106700 I
Pavir.Ab00649 Panicum virgatum Pavir.Ab00649 I
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I
Pavir.Da00404 Panicum virgatum Pavir.Da00404 I
Pavir.Db00693 Panicum virgatum Pavir.Db00693 I
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I
Pavir.J13677 Panicum virgatum Pavir.J13677 I
Pavir.J23512 Panicum virgatum Pavir.J23512 I
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I
POPTR_0008s07100 Populus trichocarpa POPTR_0008s07100 I
Pm002576 Prunus mume Pm002576 I
Pm005332 Prunus mume Pm005332 I
Pm018862 Prunus mume Pm018862 I
Pm021211 Prunus mume Pm021211 I
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I
PRUPE_ppa008979mg Prunus persica PRUPE_ppa008979mg I
PRUPE_ppa023154mg Prunus persica PRUPE_ppa023154mg I
27798.m000612 Ricinus communis 27798.m000612 I
29801.m003096 Ricinus communis 29801.m003096 I
29814.m000736 Ricinus communis 29814.m000736 I
30170.m013698 Ricinus communis 30170.m013698 I
SapurV1A.0262s0270 Salix purpurea SapurV1A.0262s0270 I
SapurV1A.0525s0230 Salix purpurea SapurV1A.0525s0230 I
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I
Si001686m.g Setaria italica Si001686m.g I
Si006938m.g Setaria italica Si006938m.g I
Si017917m.g Setaria italica Si017917m.g I
Si032789m.g Setaria italica Si032789m.g I
Solyc04g079360.1 Solanum lycopersicum Solyc04g079360.1 I
Solyc05g052850.2 Solanum lycopersicum Solyc05g052850.2 I
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I
PGSC0003DMG400007994 Solanum tuberosum PGSC0003DMG400007994 I
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I
PGSC0003DMG400027190 Solanum tuberosum PGSC0003DMG400027190 I
Sb02g013010 Sorghum bicolor Sb02g013010 I
Sb03g039950 Sorghum bicolor Sb03g039950 I
Sb04g005940 Sorghum bicolor Sb04g005940 I
Sb10g024950 Sorghum bicolor Sb10g024950 I
TCM_021796 Theobroma cacao TCM_021796 I
TCM_033907 Theobroma cacao TCM_033907 I
TCM_042629 Theobroma cacao TCM_042629 I
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I
VIT_08s0007g01540 Vitis vinifera VIT_08s0007g01540 I
VIT_13s0019g03200 Vitis vinifera VIT_13s0019g03200 I
VIT_13s0067g01360 Vitis vinifera VIT_13s0067g01360 I
VIT_18s0001g11170 Vitis vinifera VIT_18s0001g11170 I
estExt_fgenesh4_pg.C_10375 Volvox carteri estExt_fgenesh4_pg.C_10375 I
GRMZM2G050550 Zea mays GRMZM2G050550 I
GRMZM2G078820 Zea mays GRMZM2G078820 I
GRMZM2G087955 Zea mays GRMZM2G087955 I
GRMZM2G145444 Zea mays GRMZM2G145444 I
GRMZM2G169316 Zea mays GRMZM2G169316 I
GRMZM5G803308 Zea mays GRMZM5G803308 I