Gorai.013G067600 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.013G067600 T287803_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SRM1
M02307_2.00 		Arabidopsis thaliana
NNHNATCNN
NNGATNDNN		 PBM
Weirauch et al.(2014)
pTH7080 		0.735 0.846
SRM1
M07121_2.00 		Arabidopsis thaliana
YCTTATCYWHW
WDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_colamp_a 		0.735 0.846
SRM1
M07122_2.00 		Arabidopsis thaliana
YCTTATCYWHWWH
DWWDWRGATAAGR		 Dap-seq
OMalley et al.(2016)
At5g08520_col_b 		0.735 0.846
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G067600.1 Myb 122 167
Gorai.013G067600.2 Myb 122 167
Gorai.013G067600.3 Myb 122 167
Gorai.013G067600.4 Myb 122 167
Gorai.013G067600.5 Myb 122 167
Gorai.013G067600.6 Myb 122 167
Gorai.013G067600.7 Myb 122 167
Gorai.013G067600.8 Myb 122 167

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00106p00065610 Amborella trichopoda AMTR_s00106p00065610 N 0.691
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I 0.805
fgenesh2_kg.6__825__AT5G08520.1 Arabidopsis lyrata fgenesh2_kg.6__825__AT5G08520.1 I 0.730
SRM1 Arabidopsis thaliana AT5G08520 D 0.735
Bostr.13129s0103 Boechera stricta Bostr.13129s0103 I 0.723
Bostr.10199s0068 Boechera stricta Bostr.10199s0068 I 0.720
BRADI5G26110 Brachypodium distachyon BRADI5G26110 N 0.677
Bo2g009130 Brassica oleracea Bo2g009130 I 0.674
Bo3g004970 Brassica oleracea Bo3g004970 I 0.674
Bo9g174380 Brassica oleracea Bo9g174380 I 0.687
Bra009346 Brassica rapa Bra009346 I 0.666
Bra028654 Brassica rapa Bra028654 I 0.663
PK13672.1 Cannabis sativa PK13672.1 I 0.787
Cagra.1365s0066 Capsella grandiflora Cagra.1365s0066 I 0.735
Carubv10001525m.g Capsella rubella Carubv10001525m.g I 0.735
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I 0.858
Ca_19000 Cicer arietinum Ca_19000 I 0.788
Ca_14522 Cicer arietinum Ca_14522 N 0.670
Ca_05454 Cicer arietinum Ca_05454 I 0.663
Cla020348 Citrullus lanatus Cla020348 I 0.815
Cla009230 Citrullus lanatus Cla009230 I 0.789
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I 0.815
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I 0.815
Cucsa.280970 Cucumis sativus Cucsa.280970 I 0.822
Cucsa.013870 Cucumis sativus Cucsa.013870 I 0.789
Eucgr.J00349 Eucalyptus grandis Eucgr.J00349 N 0.763
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I 0.823
Thhalv10014203m.g Eutrema salsugineum Thhalv10014203m.g I 0.735
gene00786-v1.0-hybrid Fragaria vesca gene00786-v1.0-hybrid N 0.721
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I 0.667
GLYMA08G40020 Glycine max GLYMA08G40020 I 0.832
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.673
GLYMA18G18140 Glycine max GLYMA18G18140 I 0.816
GLYMA20G01450 Glycine max GLYMA20G01450 I 0.855
GLYMA07G28310 Glycine max GLYMA07G28310 I 0.850
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.673
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I 0.845
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.889
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.669
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I 0.900
Lus10041001.g Linum usitatissimum Lus10041001.g N 0.796
Lus10013447.g Linum usitatissimum Lus10013447.g I 0.801
MDP0000289018 Malus domestica MDP0000289018 I 0.671
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I 0.873
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.673
MTR_8g063600 Medicago truncatula MTR_8g063600 N 0.679
mgf009460m Mimulus guttatus mgf009460m I 0.760
GSMUA_Achr10G06880_001 Musa acuminata GSMUA_Achr10G06880_001 N 0.746
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I 0.773
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I 0.813
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I 0.810
OB04G36550 Oryza brachyantha OB04G36550 N 0.691
Pavir.Gb00055 Panicum virgatum Pavir.Gb00055 N 0.731
Pavir.Ga00233 Panicum virgatum Pavir.Ga00233 N 0.721
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.713
e_gw1.256.18.1 Physcomitrella patens e_gw1.256.18.1 N 0.687
Pm006046 Prunus mume Pm006046 I 0.796
Pm017050 Prunus mume Pm017050 I 0.697
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.697
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I 0.834
30131.m007263 Ricinus communis 30131.m007263 I 0.840
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I 0.853
SapurV1A.0333s0040 Salix purpurea SapurV1A.0333s0040 I 0.787
Si022762m.g Setaria italica Si022762m.g N 0.726
Solyc04g008870.2 Solanum lycopersicum Solyc04g008870.2 N 0.754
PGSC0003DMG400025303 Solanum tuberosum PGSC0003DMG400025303 I 0.789
Sb06g032880 Sorghum bicolor Sb06g032880 N 0.696
TCM_007672 Theobroma cacao TCM_007672 I 0.889
TCM_041160 Theobroma cacao TCM_041160 I 0.671
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I 0.842
GRMZM2G149958 Zea mays GRMZM2G149958 I 0.696