Pavir.J25000 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J25000 T289424_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.746 0.806
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.746 0.806
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J25000.1.p Myb 84 130
Pavir.J25000.1.p Myb 136 181

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_22212 Aegilops tauschii F775_22212 I 0.839
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.700
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I 0.682
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I 0.682
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.664
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.746
MYB98 Arabidopsis thaliana AT4G18770 D 0.746
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.746
Bo1g019910 Brassica oleracea Bo1g019910 I 0.746
Bo2g028290 Brassica oleracea Bo2g028290 I 0.708
Bo3g018490 Brassica oleracea Bo3g018490 I 0.703
Bo3g157300 Brassica oleracea Bo3g157300 I 0.749
Bo7g106240 Brassica oleracea Bo7g106240 I 0.720
Bra006744 Brassica rapa Bra006744 I 0.703
Bra012579 Brassica rapa Bra012579 I 0.708
Bra013346 Brassica rapa Bra013346 I 0.746
Bra020346 Brassica rapa Bra020346 I 0.713
Bra020992 Brassica rapa Bra020992 I 0.740
Bra025299 Brassica rapa Bra025299 I 0.670
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I 0.691
Cagra.1398s0045 Capsella grandiflora Cagra.1398s0045 N 0.680
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.746
Carubv10003695m.g Capsella rubella Carubv10003695m.g N 0.680
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.746
Carubv10028458m.g Capsella rubella Carubv10028458m.g I 0.691
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.676
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.715
Ca_07482 Cicer arietinum Ca_07482 I 0.712
Ca_17087 Cicer arietinum Ca_17087 I 0.718
Ca_17294 Cicer arietinum Ca_17294 I 0.745
Ca_19427 Cicer arietinum Ca_19427 I 0.664
Cla019490 Citrullus lanatus Cla019490 I 0.764
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.737
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N 0.667
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N 0.667
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.737
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.757
Eucgr.B00300 Eucalyptus grandis Eucgr.B00300 I 0.679
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.782
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.679
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I 0.684
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.749
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.679
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.687
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.737
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.728
GLYMA05G08761 Glycine max GLYMA05G08761 N 0.715
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.801
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.666
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.761
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.813
LPERR12G04190 Leersia perrieri LPERR12G04190 I 0.779
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.714
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.661
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.743
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.693
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.735
MDP0000215359 Malus domestica MDP0000215359 I 0.737
MDP0000319656 Malus domestica MDP0000319656 I 0.687
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.737
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.676
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.802
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.677
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.741
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.715
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.757
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.730
GSMUA_Achr6G06490_001 Musa acuminata GSMUA_Achr6G06490_001 I 0.737
OBART06G04170 Oryza barthii OBART06G04170 I 0.821
OBART12G04480 Oryza barthii OBART12G04480 I 0.771
OBART12G04500 Oryza barthii OBART12G04500 I 0.771
OB06G13860 Oryza brachyantha OB06G13860 I 0.830
OB12G14410 Oryza brachyantha OB12G14410 I 0.768
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.821
ORGLA12G0042300 Oryza glaberrima ORGLA12G0042300 I 0.771
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.821
OGLUM12G05330 Oryza glumaepatula OGLUM12G05330 I 0.771
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.821
BGIOSGA036541 Oryza indica BGIOSGA036541 I 0.771
OLONG_008158 Oryza longistaminata OLONG_008158 I 0.771
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.821
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.821
OMERI12G02760 Oryza meridionalis OMERI12G02760 I 0.771
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.821
ONIVA12G04220 Oryza nivara ONIVA12G04220 I 0.771
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.821
OPUNC12G04510 Oryza punctata OPUNC12G04510 I 0.762
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.821
ORUFI12G05180 Oryza rufipogon ORUFI12G05180 I 0.780
OS06G0162700 Oryza sativa OS06G0162700 I 0.821
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.844
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.844
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.847
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.661
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.709
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.676
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.747
Pm000541 Prunus mume Pm000541 I 0.687
Pm024743 Prunus mume Pm024743 I 0.737
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.687
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.737
29917.m001977 Ricinus communis 29917.m001977 I 0.668
30147.m013937 Ricinus communis 30147.m013937 I 0.777
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.713
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.754
Si039046m.g Setaria italica Si039046m.g I 0.836
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.668
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.687
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.668
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.687
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.852
TCM_012087 Theobroma cacao TCM_012087 I 0.761
TCM_041651 Theobroma cacao TCM_041651 N 0.681
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.823
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.809
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.839
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.839
Traes_7DS_E27ECBC6E Triticum aestivum Traes_7DS_E27ECBC6E I 0.794
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.839
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.717
GRMZM2G302549 Zea mays GRMZM2G302549 I 0.806
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.846