POPTR_0002s06210 (Populus trichocarpa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 POPTR_0002s06210 T295218_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANAC13
M07170_2.00 		Arabidopsis thaliana
TDNCTTGYYNNNCAAG
CTTGNNNRRCAAGNHA		 Dap-seq
OMalley et al.(2016)
ANAC013_col_a 		0.900 0.754
ANAC13
M07171_2.00 		Arabidopsis thaliana
CTTGYBHNNCAAGNHAH
DTDNCTTGNNDVRCAAG		 Dap-seq
OMalley et al.(2016)
ANAC013_colamp_a 		0.900 0.754
ANAC13
M11077_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANAC013_Q2 		0.900 0.754
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s06210.1 NAC/NAM 17 143
POPTR_0002s06210.2 NAC/NAM 17 143
POPTR_0002s06210.3 NAC/NAM 17 143
POPTR_0002s06210.4 NAC/NAM 17 143
POPTR_0002s06210.5 NAC/NAM 17 143

Links

Other NAC/NAM family TFs
Other Populus trichocarpa TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_017_00010 Aquilegia coerulea Aquca_017_00010 N 0.903
ANAC13 Arabidopsis lyrata fgenesh2_kg.1__3425__AT1G32870.2 I 0.909
ANAC13 Arabidopsis thaliana AT1G32870 D 0.900
Bostr.3359s0074 Boechera stricta Bostr.3359s0074 I 0.899
Bo7g057730 Brassica oleracea Bo7g057730 I 0.901
Bra012342 Brassica rapa Bra012342 I 0.884
Cagra.1443s0015 Capsella grandiflora Cagra.1443s0015 I 0.898
Carubv10008817m.g Capsella rubella Carubv10008817m.g I 0.896
evm.TU.supercontig_26.135 Carica papaya evm.TU.supercontig_26.135 I 0.944
Ca_04337 Cicer arietinum Ca_04337 N 0.917
Cla013854 Citrullus lanatus Cla013854 I 0.960
Cla016588 Citrullus lanatus Cla016588 N 0.903
Ciclev10000612m.g Citrus clementina Ciclev10000612m.g I 0.943
Cucsa.364130 Cucumis sativus Cucsa.364130 N 0.953
Eucgr.F02771 Eucalyptus grandis Eucgr.F02771 N 0.912
Thhalv10007369m.g Eutrema salsugineum Thhalv10007369m.g I 0.890
gene27539-v1.0-hybrid Fragaria vesca gene27539-v1.0-hybrid N 0.931
GLYMA10G36360 Glycine max GLYMA10G36360 N 0.925
GLYMA20G31210 Glycine max GLYMA20G31210 N 0.921
Gorai.005G076200 Gossypium raimondii Gorai.005G076200 I 0.938
Gorai.009G260000 Gossypium raimondii Gorai.009G260000 I 0.941
Lus10028713.g Linum usitatissimum Lus10028713.g I 0.930
LjSGA_007769.1 Lotus japonicus LjSGA_007769.1 N 0.897
MDP0000852271 Malus domestica MDP0000852271 I 0.921
MDP0000169485 Malus domestica MDP0000169485 I 0.922
MDP0000146969 Malus domestica MDP0000146969 I 0.922
cassava22173.valid.m1 Manihot esculenta cassava22173.valid.m1 I 0.946
cassava19069.valid.m1 Manihot esculenta cassava19069.valid.m1 I 0.887
MTR_1g097300 Medicago truncatula MTR_1g097300 N 0.911
mg018130m Mimulus guttatus mg018130m I 0.922
POPTR_0005s22180 Populus trichocarpa POPTR_0005s22180 I 0.968
Pm022358 Prunus mume Pm022358 N 0.930
PRUPE_ppa003410mg Prunus persica PRUPE_ppa003410mg N 0.930
SapurV1A.0134s0420 Salix purpurea SapurV1A.0134s0420 I 0.970
SapurV1A.0348s0040 Salix purpurea SapurV1A.0348s0040 I 0.962
Solyc12g056790.1 Solanum lycopersicum Solyc12g056790.1 I 0.899
Solyc04g072220.2 Solanum lycopersicum Solyc04g072220.2 I 0.911
PGSC0003DMG400031149 Solanum tuberosum PGSC0003DMG400031149 I 0.912
TCM_036587 Theobroma cacao TCM_036587 I 0.939
VIT_18s0001g01820 Vitis vinifera VIT_18s0001g01820 I 0.932