ENSLOCG00000007875 (Lepisosteus oculatus)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00554 (RHD_DNA_bind) IPR011539 ENSLOCG00000007875 T317238_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nfatc1
M09360_2.00 		Mus musculus
KABTCANWBTTTCCW
WGGAAAVWNTGAVTM		 Misc
Kulakovskiy et al.(2013)
NFAC1_MOUSE.H11MO.0.A 		0.944 0.944
NFATC1
M02443_2.00 		Meleagris gallopavo
NNTTTCCRNN
NNYGGAAANN		 PBM
Weirauch et al.(2014)
pTH8315 		0.930 0.930
NFATC1
M02444_2.00 		Monodelphis domestica
NNDTTCCDNN
NNHGGAAHNN		 PBM
Weirauch et al.(2014)
pTH8401 		0.923 0.923
nfatc1
M02446_2.00 		Xenopus tropicalis
NNTTTCCRNN
NNYGGAAANN		 PBM
Weirauch et al.(2014)
pTH8557 		0.916 0.916
NFATC1
M03449_2.00 		Homo sapiens
HKGRAAADDNWBTTTCCAYN
NRTGGAAAVWNHHTTTYCMD		 SELEX
Jolma et al.(2013)
NFATC1_1 		0.881 0.881
NFATC1
M03450_2.00 		Homo sapiens
TTTCCAYWRYGGAAA
TTTCCRYWRTGGAAA		 SELEX
Jolma et al.(2013)
NFATC1_2 		0.881 0.881
NFATC1
M03451_2.00 		Homo sapiens
NTTTCCATGGAAAN
NTTTCCATGGAAAN		 SELEX
Jolma et al.(2013)
NFATC1_3 		0.881 0.881
NFATC1
M02747_2.00 		Homo sapiens
DTTCCRYGGAA
TTCCRYGGAAH		 SELEX
Jolma et al.(2010)
NFATc1_dimer 		0.881 0.881
NFATC1
M02748_2.00 		Homo sapiens
GGAANDTTCC
GGAAHNTTCC		 SELEX
Jolma et al.(2010)
NFATc1_dimer_type2 		0.881 0.881
NFATC1
M02749_2.00 		Homo sapiens
WDTTTCCAY
RTGGAAAHW		 SELEX
Jolma et al.(2010)
NFATc1_monomer 		0.881 0.881
NFATC1
M05711_2.00 		Homo sapiens
NTTTCCATGGAAAN
NTTTCCATGGAAAN		 SELEX
Yin et al.(2017)
NFATC1_eDBD_HT-SELEX_1 		0.881 0.881
NFATC1
M05712_2.00 		Homo sapiens
NTTTCCRYNNRYGGAAAN
NTTTCCRYNNRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC1_eDBD_HT-SELEX_2 		0.881 0.881
NFATC1
M09349_2.00 		Homo sapiens
HBYHWBWBTTTCCWB
VWGGAAAVWVWDRVD		 Misc
Kulakovskiy et al.(2013)
NFAC1_HUMAN.H11MO.0.B 		0.881 0.881
NFATC1
M09625_2.00 		Homo sapiens
WBTTTCCAYY
RRTGGAAAVW		 Misc
Heinz et al.(2010)
Jurkat-NFATC1_Jolma_et_al. 		0.881 0.881
NFATC1
M11232_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT2_Q4 		0.881 0.881
NFATC1
M11233_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT2_Q5_01 		0.881 0.881
NFATC1
M11234_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT2_Q5 		0.881 0.881
NFATC1
M05713_2.00 		Homo sapiens
NTTTCCRYGGAAAN
NTTTCCRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC1_eDBD_Methyl-HT-SELEX_1 		0.881 0.881
NFATC1
M05714_2.00 		Homo sapiens
NTTTCCRYNNRYGGAAAN
NTTTCCRYNNRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC1_eDBD_Methyl-HT-SELEX_2 		0.881 0.881
NFATC2
M02441_2.00 		Homo sapiens
WNTTTCCRHN
NDYGGAAANW		 PBM
Weirauch et al.(2014)
pTH9196 		0.853 0.853
NFATC2
M05705_2.00 		Homo sapiens
DTTTCCATGGAAAM
KTTTCCATGGAAAH		 SELEX
Yin et al.(2017)
NFATC2_eDBD_HT-SELEX_1 		0.853 0.853
NFATC2
M05706_2.00 		Homo sapiens
NTTTCCRYNNRYGGAAAN
NTTTCCRYNNRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC2_eDBD_HT-SELEX_2 		0.853 0.853
NFATC2
M09346_2.00 		Homo sapiens
NWTTTTCCW
WGGAAAAWN		 Misc
Kulakovskiy et al.(2013)
NFAC2_HUMAN.H11MO.0.B 		0.853 0.853
Nfatc2
M09357_2.00 		Mus musculus
NWTTTTCCW
WGGAAAAWN		 Misc
Kulakovskiy et al.(2013)
NFAC2_MOUSE.H11MO.0.C 		0.853 0.853
NFATC2
M11221_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT1_Q4 		0.853 0.853
NFATC2
M11222_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT1_Q5 		0.853 0.853
NFATC2
M11223_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT1_Q6 		0.853 0.853
NFATC2
M08462_2.00 		Homo sapiens
TTTTCCA
TGGAAAA		 COMPILED
Mathelier et al.(2014)
MA0152.1 		0.853 0.853
NFATC2
M05707_2.00 		Homo sapiens
NTTTCCGCGGAAAN
NTTTCCGCGGAAAN		 SELEX
Yin et al.(2017)
NFATC2_eDBD_Methyl-HT-SELEX_1 		0.853 0.853
NFATC2
M05708_2.00 		Homo sapiens
NTTTCCRYNNRYGGAAAN
NTTTCCRYNNRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC2_eDBD_Methyl-HT-SELEX_2 		0.853 0.853
NFATC3
M02440_2.00 		Homo sapiens
DNTTTCCRNN
NNYGGAAANH		 PBM
Weirauch et al.(2014)
pTH9192 		0.846 0.846
NFATC3
M05693_2.00 		Homo sapiens
WNTTTCCRYN
NRYGGAAANW		 SELEX
Yin et al.(2017)
NFATC3_eDBD_HT-SELEX_1 		0.846 0.846
NFATC3
M05694_2.00 		Homo sapiens
NTTTCCATGGAAAN
NTTTCCATGGAAAN		 SELEX
Yin et al.(2017)
NFATC3_eDBD_HT-SELEX_2 		0.846 0.846
NFATC3
M05695_2.00 		Homo sapiens
DYGGAAANNNNNNNTTTCCRH
DYGGAAANNNNNNNTTTCCRH		 SELEX
Yin et al.(2017)
NFATC3_eDBD_HT-SELEX_3 		0.846 0.846
NFATC3
M09343_2.00 		Homo sapiens
RDTTTTCCA
TGGAAAAHY		 Misc
Kulakovskiy et al.(2013)
NFAC3_HUMAN.H11MO.0.B 		0.846 0.846
Nfatc3
M09359_2.00 		Mus musculus
RDTTTTCCA
TGGAAAAHY		 Misc
Kulakovskiy et al.(2013)
NFAC3_MOUSE.H11MO.0.B 		0.846 0.846
NFATC3
M11217_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT4_Q3 		0.846 0.846
NFATC3
M11218_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT4_Q5 		0.846 0.846
NFATC3
M05696_2.00 		Homo sapiens
WNTTTCCRYN
NRYGGAAANW		 SELEX
Yin et al.(2017)
NFATC3_eDBD_Methyl-HT-SELEX_1 		0.846 0.846
NFATC3
M05697_2.00 		Homo sapiens
NTTTCCRYGGAAAN
NTTTCCRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC3_eDBD_Methyl-HT-SELEX_2 		0.846 0.846
NFATC3
M05698_2.00 		Homo sapiens
RYGGAAANHNNNDNTTTCCRY
RYGGAAANHNNNDNTTTCCRY		 SELEX
Yin et al.(2017)
NFATC3_eDBD_Methyl-HT-SELEX_3 		0.846 0.846
NFATC4
M01306_2.00 		Homo sapiens
NNNWWWVYRN
NYRBWWWNNN		 PBM
Lambert et al.(2019)
pTH9347 		0.811 0.811
NFATC4
M05701_2.00 		Homo sapiens
DBTTTCCRYN
NRYGGAAAVH		 SELEX
Yin et al.(2017)
NFATC4_eDBD_HT-SELEX_1 		0.811 0.811
NFATC4
M05702_2.00 		Homo sapiens
NKTTCCATGGAAMV
BKTTCCATGGAAMN		 SELEX
Yin et al.(2017)
NFATC4_eDBD_HT-SELEX_2 		0.811 0.811
NFATC4
M09345_2.00 		Homo sapiens
HNDBTTTCCN
NGGAAAVHND		 Misc
Kulakovskiy et al.(2013)
NFAC4_HUMAN.H11MO.0.C 		0.811 0.811
Nfatc4
M09354_2.00 		Mus musculus
HNDBTTTCCN
NGGAAAVHND		 Misc
Kulakovskiy et al.(2013)
NFAC4_MOUSE.H11MO.0.C 		0.811 0.811
NFATC4
M11219_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT3_Q3_01 		0.811 0.811
NFATC4
M11220_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT3_Q3 		0.811 0.811
NFATC4
M05703_2.00 		Homo sapiens
DNTTTCCRYN
NRYGGAAANH		 SELEX
Yin et al.(2017)
NFATC4_eDBD_Methyl-HT-SELEX_1 		0.811 0.811
NFATC4
M05704_2.00 		Homo sapiens
NKTTCCRYGGAAMN
NKTTCCRYGGAAMN		 SELEX
Yin et al.(2017)
NFATC4_eDBD_Methyl-HT-SELEX_2 		0.811 0.811
ENSTNIG00000018271
M02445_2.00 		Tetraodon nigroviridis
DNDTTCCRNN
NNYGGAAHNH		 PBM
Weirauch et al.(2014)
pTH9005 		0.762 0.762
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000009563 Rel 421 581
ENSLOCP00000009579 Rel 421 581

Links

Other Rel family TFs
Other Lepisosteus oculatus TFs

247 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_31908 Aegilops tauschii F775_31908 N 0.000
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.000
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.000
SPL2 Arabidopsis thaliana AT5G43270 N 0.000
BRADI3G03510 Brachypodium distachyon BRADI3G03510 N 0.000
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.000
Bo7g065290 Brassica oleracea Bo7g065290 N 0.000
Bo9g058970 Brassica oleracea Bo9g058970 N 0.000
Bra027478 Brassica rapa Bra027478 N 0.000
Bra033671 Brassica rapa Bra033671 N 0.000
PK16953.1 Cannabis sativa PK16953.1 N 0.000
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N 0.000
Carubv10026434m.g Capsella rubella Carubv10026434m.g N 0.000
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.000
Ca_11356 Cicer arietinum Ca_11356 I 0.000
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.000
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.000
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.000
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.000
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.000
MLOC_11199 Hordeum vulgare MLOC_11199 N 0.000
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.000
LPERR02G02980 Leersia perrieri LPERR02G02980 N 0.000
LPERR02G04880 Leersia perrieri LPERR02G04880 N 0.000
LPERR06G22200 Leersia perrieri LPERR06G22200 N 0.000
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.000
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N 0.000
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.000
MDP0000155354 Malus domestica MDP0000155354 N 0.000
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.000
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.000
MTR_3g085180 Medicago truncatula MTR_3g085180 N 0.000
mgf010397m Mimulus guttatus mgf010397m N 0.000
mgf019346m Mimulus guttatus mgf019346m I 0.000
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.000
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.000
GSMUA_Achr3G27750_001 Musa acuminata GSMUA_Achr3G27750_001 N 0.000
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N 0.000
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.000
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N 0.000
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.000
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N 0.000
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N 0.000
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N 0.000
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.000
OBART02G03260 Oryza barthii OBART02G03260 N 0.000
OBART06G26610 Oryza barthii OBART06G26610 N 0.000
OB02G12930 Oryza brachyantha OB02G12930 N 0.000
OB02G14840 Oryza brachyantha OB02G14840 N 0.000
OB06G34330 Oryza brachyantha OB06G34330 N 0.000
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N 0.000
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N 0.000
ORGLA06G0222300 Oryza glaberrima ORGLA06G0222300 N 0.000
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N 0.000
OGLUM06G28030 Oryza glumaepatula OGLUM06G28030 N 0.000
SPL3 Oryza indica BGIOSGA007499 N 0.000
BGIOSGA007643 Oryza indica BGIOSGA007643 N 0.000
SPL12 Oryza indica BGIOSGA020577 N 0.000
OLONG_012160 Oryza longistaminata OLONG_012160 N 0.000
OLONG_025693 Oryza longistaminata OLONG_025693 N 0.000
OMERI02G03900 Oryza meridionalis OMERI02G03900 N 0.000
OMERI02G06420 Oryza meridionalis OMERI02G06420 N 0.000
OMERI06G26720 Oryza meridionalis OMERI06G26720 N 0.000
ONIVA02G03070 Oryza nivara ONIVA02G03070 N 0.000
ONIVA02G05960 Oryza nivara ONIVA02G05960 N 0.000
ONIVA06G29160 Oryza nivara ONIVA06G29160 N 0.000
OPUNC02G02570 Oryza punctata OPUNC02G02570 N 0.000
OPUNC02G04800 Oryza punctata OPUNC02G04800 N 0.000
OPUNC06G24320 Oryza punctata OPUNC06G24320 N 0.000
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N 0.000
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N 0.000
ORUFI06G28570 Oryza rufipogon ORUFI06G28570 N 0.000
OS02G0139400 Oryza sativa OS02G0139400 N 0.000
SPL4 Oryza sativa OS02G0174100 N 0.000
SPL12 Oryza sativa OS06G0703500 N 0.000
Pavir.Aa03225 Panicum virgatum Pavir.Aa03225 N 0.000
Pavir.Ab00358 Panicum virgatum Pavir.Ab00358 N 0.000
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N 0.000
Pavir.J20730 Panicum virgatum Pavir.J20730 N 0.000
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.000
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.000
Pm007020 Prunus mume Pm007020 N 0.000
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.000
29929.m004641 Ricinus communis 29929.m004641 I 0.000
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.000
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.000
Si017520m.g Setaria italica Si017520m.g N 0.000
Si017749m.g Setaria italica Si017749m.g N 0.000
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.000
Sb04g003175 Sorghum bicolor Sb04g003175 N 0.000
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.000
Sb10g029190 Sorghum bicolor Sb10g029190 N 0.000
TCM_008772 Theobroma cacao TCM_008772 N 0.000
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N 0.000
Traes_6AS_99C6A3B0B Triticum aestivum Traes_6AS_99C6A3B0B N 0.000
Traes_6BS_F50663DF7 Triticum aestivum Traes_6BS_F50663DF7 N 0.000
Traes_6DS_7B1596298 Triticum aestivum Traes_6DS_7B1596298 N 0.000
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N 0.000
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.000
GRMZM2G065451 Zea mays GRMZM2G065451 N 0.000
GRMZM2G097275 Zea mays GRMZM2G097275 N 0.000
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.000
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.000
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.000
GRMZM2G414805 Zea mays GRMZM2G414805 N 0.000