ENSMPUG00000003735 (Mustela putorius furo)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSMPUG00000003735 T318356_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.792 1.000
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.792 1.000
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.792 1.000
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.792 1.000
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.792 1.000
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.792 1.000
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.792 1.000
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.792 1.000
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.792 1.000
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.792 1.000
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.792 1.000
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.792 1.000
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.792 1.000
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.792 1.000
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.792 1.000
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.710 0.620
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.710 0.620
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.710 0.620
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMPUP00000003705 RFX 89 168

Links

Other RFX family TFs
Other Mustela putorius furo TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I
scaffold_403077.1 Arabidopsis lyrata scaffold_403077.1 I
AT2G42280 Arabidopsis thaliana AT2G42280 D
BHLH122 Arabidopsis thaliana AT1G51140 D
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I
Bostr.25993s0551 Boechera stricta Bostr.25993s0551 I
BRADI3G48070 Brachypodium distachyon BRADI3G48070 I
BRADI4G33670 Brachypodium distachyon BRADI4G33670 I
Bo4g015860 Brassica oleracea Bo4g015860 I
Bo4g191390 Brassica oleracea Bo4g191390 I
Bo6g024810 Brassica oleracea Bo6g024810 I
Bra004678 Brassica rapa Bra004678 I
Bra016886 Brassica rapa Bra016886 I
Bra018896 Brassica rapa Bra018896 I
PK20089.1 Cannabis sativa PK20089.1 I
Cagra.2636s0012 Capsella grandiflora Cagra.2636s0012 I
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I
Carubv10023498m.g Capsella rubella Carubv10023498m.g I
Carubv10009458m.g Capsella rubella Carubv10009458m.g I
Ca_02662 Cicer arietinum Ca_02662 I
Ca_14223 Cicer arietinum Ca_14223 I
Ca_18899 Cicer arietinum Ca_18899 I
Cla006394 Citrullus lanatus Cla006394 I
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I
Cucsa.143260 Cucumis sativus Cucsa.143260 I
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I
GLYMA15G03740 Glycine max GLYMA15G03740 I
GLYMA13G41670 Glycine max GLYMA13G41670 I
GLYMA11G13960 Glycine max GLYMA11G13960 I
GLYMA12G05930 Glycine max GLYMA12G05930 I
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I
MLOC_30102 Hordeum vulgare MLOC_30102 I
MLOC_12058 Hordeum vulgare MLOC_12058 I
LPERR09G10800 Leersia perrieri LPERR09G10800 I
LPERR08G16800 Leersia perrieri LPERR08G16800 I
LPERR04G13560 Leersia perrieri LPERR04G13560 I
MDP0000307685 Malus domestica MDP0000307685 I
MTR_4g065870 Medicago truncatula MTR_4g065870 I
MTR_2g098310 Medicago truncatula MTR_2g098310 I
MTR_1g052470 Medicago truncatula MTR_1g052470 I
mgf016092m Mimulus guttatus mgf016092m I
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I
OBART04G16900 Oryza barthii OBART04G16900 I
OB04G24170 Oryza brachyantha OB04G24170 I
ORGLA04G0140000 Oryza glaberrima ORGLA04G0140000 I
OGLUM04G16920 Oryza glumaepatula OGLUM04G16920 I
BGIOSGA016651 Oryza indica BGIOSGA016651 I
OMERI04G14260 Oryza meridionalis OMERI04G14260 I
ONIVA04G15000 Oryza nivara ONIVA04G15000 I
OPUNC04G14700 Oryza punctata OPUNC04G14700 I
ORUFI04G18350 Oryza rufipogon ORUFI04G18350 I
OS04G0489600 Oryza sativa OS04G0489600 I
Pavir.Fa00493 Panicum virgatum Pavir.Fa00493 I
Pavir.Ba00676 Panicum virgatum Pavir.Ba00676 I
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I
Pavir.Bb03157 Panicum virgatum Pavir.Bb03157 I
Pavir.J00377 Panicum virgatum Pavir.J00377 I
Pavir.J14004 Panicum virgatum Pavir.J14004 I
Pavir.J25484 Panicum virgatum Pavir.J25484 I
estExt_fgenesh1_pg.C_2130035 Physcomitrella patens estExt_fgenesh1_pg.C_2130035 N
e_gw1.83.237.1 Physcomitrella patens e_gw1.83.237.1 I
POPTR_0003s22290 Populus trichocarpa POPTR_0003s22290 I
30169.m006403 Ricinus communis 30169.m006403 I
SapurV1A.0009s0400 Salix purpurea SapurV1A.0009s0400 I
Si030166m.g Setaria italica Si030166m.g I
Si029614m.g Setaria italica Si029614m.g I
Si013950m.g Setaria italica Si013950m.g I
Sb07g027810 Sorghum bicolor Sb07g027810 I
Sb02g028300 Sorghum bicolor Sb02g028300 I
TCM_040564 Theobroma cacao TCM_040564 I
VIT_06s0004g01740 Vitis vinifera VIT_06s0004g01740 I
GRMZM5G879527 Zea mays GRMZM5G879527 N
GRMZM2G417597 Zea mays GRMZM2G417597 I
GRMZM2G153454 Zea mays GRMZM2G153454 I
GRMZM2G142932 Zea mays GRMZM2G142932 I
GRMZM2G085467 Zea mays GRMZM2G085467 I